Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4242

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
4,933,613	+		Pf6N2E2_4241	0.37	-0.4
4,933,753	+		Pf6N2E2_4241	0.47	+0.5
4,933,753	+		Pf6N2E2_4241	0.47	-0.9
4,933,753	+		Pf6N2E2_4241	0.47	-1.0
4,933,754	-		Pf6N2E2_4241	0.47	+0.3
4,933,754	-		Pf6N2E2_4241	0.47	-0.9
4,933,754	-		Pf6N2E2_4241	0.47	-0.1
4,933,754	-		Pf6N2E2_4241	0.47	-0.5
4,933,836	-		Pf6N2E2_4241	0.52	+0.5
4,933,963	+		Pf6N2E2_4241	0.61	-0.8
4,934,053	+		Pf6N2E2_4241	0.67	+0.1
4,934,053	+		Pf6N2E2_4241	0.67	-0.1
4,934,054	-		Pf6N2E2_4241	0.67	+0.5
4,934,054	-		Pf6N2E2_4241	0.67	+0.2
4,934,086	-		Pf6N2E2_4241	0.69	-0.4
4,934,190	+		Pf6N2E2_4241	0.77	-0.5
4,934,321	-		Pf6N2E2_4241	0.86	-1.4
4,934,341	+		Pf6N2E2_4241	0.87	+1.3
4,934,341	+		Pf6N2E2_4241	0.87	-0.2
4,934,342	-		Pf6N2E2_4241	0.87	+0.2
4,934,342	-		Pf6N2E2_4241	0.87	+0.3
4,934,342	-		Pf6N2E2_4241	0.87	-0.3
4,934,342	-		Pf6N2E2_4241	0.87	-1.0
4,934,342	-		Pf6N2E2_4241	0.87	-0.1
4,934,342	-		Pf6N2E2_4241	0.87	+0.0
4,934,342	-		Pf6N2E2_4241	0.87	-0.3
4,934,344	+		Pf6N2E2_4241	0.87	-0.5
4,934,345	-		Pf6N2E2_4241	0.87	+0.1
4,934,345	-		Pf6N2E2_4241	0.87	+0.4
4,934,408	-				-0.6
4,934,408	-				+0.3
4,934,439	+				+0.3
4,934,533	+				+0.4
4,934,534	-				-0.0
4,934,534	-				-0.0
4,934,674	+		Pf6N2E2_4242	0.15	+0.0
4,934,675	-		Pf6N2E2_4242	0.15	+0.4
4,934,775	+		Pf6N2E2_4242	0.25	-0.0
4,934,775	+		Pf6N2E2_4242	0.25	-0.6
4,934,776	-		Pf6N2E2_4242	0.25	+0.2
4,934,776	-		Pf6N2E2_4242	0.25	+1.0
4,934,776	-		Pf6N2E2_4242	0.25	+1.0
4,934,779	+		Pf6N2E2_4242	0.25	-0.5
4,934,779	+		Pf6N2E2_4242	0.25	-0.3
4,934,779	+		Pf6N2E2_4242	0.25	+0.7
4,934,779	+		Pf6N2E2_4242	0.25	+0.5
4,934,779	+		Pf6N2E2_4242	0.25	-0.7
4,934,780	-		Pf6N2E2_4242	0.26	-1.1
4,934,780	-		Pf6N2E2_4242	0.26	+0.0
4,934,827	+		Pf6N2E2_4242	0.30	+0.5
4,934,828	-		Pf6N2E2_4242	0.31	-0.1
4,934,828	-		Pf6N2E2_4242	0.31	+0.9
4,934,828	-		Pf6N2E2_4242	0.31	-0.5
4,935,013	+		Pf6N2E2_4242	0.50	-0.2
4,935,014	-		Pf6N2E2_4242	0.50	+0.9
4,935,038	-		Pf6N2E2_4242	0.52	-1.3
4,935,140	-		Pf6N2E2_4242	0.63	+0.3
4,935,149	+		Pf6N2E2_4242	0.64	-0.4
4,935,149	+		Pf6N2E2_4242	0.64	+0.1
4,935,150	-		Pf6N2E2_4242	0.64	+0.1
4,935,268	+		Pf6N2E2_4242	0.76	+0.7
4,935,268	+		Pf6N2E2_4242	0.76	-0.7
4,935,268	+		Pf6N2E2_4242	0.76	-1.2
4,935,268	+		Pf6N2E2_4242	0.76	-0.1
4,935,268	+		Pf6N2E2_4242	0.76	+0.7
4,935,268	+		Pf6N2E2_4242	0.76	-0.3
4,935,268	+		Pf6N2E2_4242	0.76	-0.1
4,935,269	-		Pf6N2E2_4242	0.76	+0.6
4,935,269	-		Pf6N2E2_4242	0.76	-0.7
4,935,269	-		Pf6N2E2_4242	0.76	-0.2
4,935,424	+				-0.3
4,935,454	+				+1.3
4,935,454	+				+0.2
4,935,455	-				-0.4
4,935,509	+				-0.4
4,935,509	+				+0.3
4,935,510	-				-0.3
4,935,510	-				-0.4
4,935,516	-				-1.5
4,935,516	-				-1.3
4,935,590	+		Pf6N2E2_4243	0.11	+1.4
4,935,591	-		Pf6N2E2_4243	0.11	-0.7
4,935,591	-		Pf6N2E2_4243	0.11	-0.7
4,935,604	+		Pf6N2E2_4243	0.13	+0.3
4,935,738	+		Pf6N2E2_4243	0.29	+0.3
4,935,738	+		Pf6N2E2_4243	0.29	-0.5
4,935,739	-		Pf6N2E2_4243	0.29	+1.9
4,935,739	-		Pf6N2E2_4243	0.29	+0.2
4,935,739	-		Pf6N2E2_4243	0.29	-1.6
4,935,739	-		Pf6N2E2_4243	0.29	-0.1
4,935,739	-		Pf6N2E2_4243	0.29	-1.5
4,935,739	-		Pf6N2E2_4243	0.29	+0.3
4,935,739	-		Pf6N2E2_4243	0.29	-0.1
4,935,777	+		Pf6N2E2_4243	0.34	+0.8
4,935,777	+		Pf6N2E2_4243	0.34	-0.1
4,935,826	+		Pf6N2E2_4243	0.40	+0.7
4,936,020	+		Pf6N2E2_4243	0.63	+0.9
4,936,021	-		Pf6N2E2_4243	0.64	-1.3
4,936,086	+		Pf6N2E2_4243	0.71	+0.1
4,936,087	-		Pf6N2E2_4243	0.72	+1.3
4,936,087	-		Pf6N2E2_4243	0.72	-1.0
4,936,107	+		Pf6N2E2_4243	0.74	-0.9
4,936,107	+		Pf6N2E2_4243	0.74	+0.1
4,936,469	+				-0.7