Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3845

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
4,476,383	+				+0.0
4,476,395	-				-2.6
4,476,455	+				+0.4
4,476,456	-				-0.1
4,476,456	-				-2.1
4,476,476	-				-0.2
4,476,522	+				-1.2
4,476,555	+				-0.2
4,476,742	-		Pf6N2E2_3844	0.26	+0.2
4,476,875	+		Pf6N2E2_3844	0.59	-0.7
4,476,875	+		Pf6N2E2_3844	0.59	-0.1
4,477,036	+				-0.8
4,477,036	+				-0.8
4,477,037	-				+0.3
4,477,037	-				+0.2
4,477,037	-				-0.9
4,477,037	-				-0.3
4,477,037	-				-0.4
4,477,040	+				-0.7
4,477,041	-				-1.0
4,477,041	-				-0.8
4,477,251	+				-1.5
4,477,251	+				-1.4
4,477,252	-				+0.6
4,477,264	+				-0.2
4,477,266	+				-0.3
4,477,267	-				-0.7
4,477,267	-				-0.7
4,477,267	-				-0.1
4,477,294	+				-0.6
4,477,294	+				-0.4
4,477,294	+				+0.0
4,477,294	+				-0.0
4,477,294	+				-1.4
4,477,295	-				-0.0
4,477,295	-				+0.0
4,477,295	-				-2.1
4,477,340	+				-2.2
4,477,340	+				-1.2
4,477,341	-				-0.6
4,477,341	-				-1.0
4,477,411	+				+1.5
4,477,411	+				-0.6
4,477,412	-				+0.2
4,477,412	-				+0.3
4,477,412	-				+0.1
4,477,412	-				-0.7
4,477,599	-		Pf6N2E2_3845	0.13	+0.3
4,477,619	+		Pf6N2E2_3845	0.14	+0.5
4,477,856	-		Pf6N2E2_3845	0.25	-0.3
4,477,856	-		Pf6N2E2_3845	0.25	+0.6
4,477,856	-		Pf6N2E2_3845	0.25	-0.6
4,477,988	+		Pf6N2E2_3845	0.30	-1.1
4,477,989	-		Pf6N2E2_3845	0.30	-0.8
4,478,038	+		Pf6N2E2_3845	0.33	+0.3
4,478,038	+		Pf6N2E2_3845	0.33	-0.6
4,478,039	-		Pf6N2E2_3845	0.33	+0.1
4,478,601	+		Pf6N2E2_3845	0.58	-0.8
4,478,601	+		Pf6N2E2_3845	0.58	-1.0
4,478,602	-		Pf6N2E2_3845	0.58	+1.8
4,478,602	-		Pf6N2E2_3845	0.58	+0.4
4,478,803	+		Pf6N2E2_3845	0.67	+0.7
4,478,803	+		Pf6N2E2_3845	0.67	+1.3
4,478,804	-		Pf6N2E2_3845	0.67	-1.9
4,478,804	-		Pf6N2E2_3845	0.67	-1.0
4,478,804	-		Pf6N2E2_3845	0.67	-1.3
4,478,851	-		Pf6N2E2_3845	0.69	+1.9
4,478,851	-		Pf6N2E2_3845	0.69	-0.7
4,479,254	+		Pf6N2E2_3845	0.87	+0.2
4,479,255	-		Pf6N2E2_3845	0.87	+0.6
4,479,255	-		Pf6N2E2_3845	0.87	-0.8
4,479,340	+				-0.4
4,479,341	-				-0.7
4,479,341	-				+0.4
4,479,341	-				+0.1
4,479,687	+		Pf6N2E2_3846	0.14	-1.2
4,479,687	+		Pf6N2E2_3846	0.14	+0.5
4,479,687	+		Pf6N2E2_3846	0.14	+0.5
4,479,688	-		Pf6N2E2_3846	0.14	-1.0
4,479,688	-		Pf6N2E2_3846	0.14	-0.0
4,479,688	-		Pf6N2E2_3846	0.14	+0.8
4,479,781	-		Pf6N2E2_3846	0.23	+0.6
4,479,781	-		Pf6N2E2_3846	0.23	-1.2
4,479,781	-		Pf6N2E2_3846	0.23	-0.7
4,479,783	+		Pf6N2E2_3846	0.23	-0.1
4,479,783	+		Pf6N2E2_3846	0.23	-0.6
4,479,783	+		Pf6N2E2_3846	0.23	+0.5
4,479,783	+		Pf6N2E2_3846	0.23	-0.4
4,479,784	-		Pf6N2E2_3846	0.23	+0.0
4,479,784	-		Pf6N2E2_3846	0.23	-1.7
4,479,784	-		Pf6N2E2_3846	0.23	+1.0
4,479,784	-		Pf6N2E2_3846	0.23	-0.2
4,479,784	-		Pf6N2E2_3846	0.23	+0.5
4,480,074	+		Pf6N2E2_3846	0.50	+0.5
4,480,074	+		Pf6N2E2_3846	0.50	+2.3
4,480,075	-		Pf6N2E2_3846	0.50	+0.3
4,480,219	+		Pf6N2E2_3846	0.64	+0.9
4,480,219	+		Pf6N2E2_3846	0.64	+0.6
4,480,220	-		Pf6N2E2_3846	0.64	-1.0
4,480,220	-		Pf6N2E2_3846	0.64	+0.3
4,480,506	+				+0.0
4,480,506	+				-0.6
4,480,506	+				+0.5
4,480,507	-				-2.2
4,480,507	-				-0.9
4,480,507	-				+0.3
4,480,507	-				-1.2
4,480,507	-				-1.0
4,480,508	+				+0.5
4,480,509	-				-1.3
4,480,509	-				+0.6