Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3752

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
4,367,456	+		Pf6N2E2_3751	0.32	-2.6
4,367,634	-		Pf6N2E2_3751	0.45	-3.7
4,367,675	+		Pf6N2E2_3751	0.48	-2.2
4,367,675	+		Pf6N2E2_3751	0.48	-1.9
4,367,675	+		Pf6N2E2_3751	0.48	-1.9
4,367,675	+		Pf6N2E2_3751	0.48	-1.5
4,367,675	+		Pf6N2E2_3751	0.48	-3.7
4,367,675	+		Pf6N2E2_3751	0.48	-3.6
4,367,675	+		Pf6N2E2_3751	0.48	-2.3
4,367,675	+		Pf6N2E2_3751	0.48	-2.0
4,367,675	+		Pf6N2E2_3751	0.48	-3.4
4,367,676	-		Pf6N2E2_3751	0.48	-3.7
4,367,676	-		Pf6N2E2_3751	0.48	-0.3
4,367,676	-		Pf6N2E2_3751	0.48	-2.6
4,367,676	-		Pf6N2E2_3751	0.48	-3.3
4,367,676	-		Pf6N2E2_3751	0.48	-3.9
4,367,676	-		Pf6N2E2_3751	0.48	-2.0
4,367,676	-		Pf6N2E2_3751	0.48	-5.1
4,367,676	-		Pf6N2E2_3751	0.48	-3.1
4,367,676	-		Pf6N2E2_3751	0.48	-5.0
4,367,681	+		Pf6N2E2_3751	0.48	-3.6
4,367,681	+		Pf6N2E2_3751	0.48	-1.9
4,367,681	+		Pf6N2E2_3751	0.48	-2.6
4,367,681	+		Pf6N2E2_3751	0.48	-2.7
4,367,681	+		Pf6N2E2_3751	0.48	-3.4
4,367,681	+		Pf6N2E2_3751	0.48	-0.7
4,367,681	+		Pf6N2E2_3751	0.48	-2.9
4,367,682	-		Pf6N2E2_3751	0.48	-2.4
4,367,682	-		Pf6N2E2_3751	0.48	-0.7
4,367,682	-		Pf6N2E2_3751	0.48	-2.6
4,367,682	-		Pf6N2E2_3751	0.48	-4.1
4,367,711	+		Pf6N2E2_3751	0.50	-0.3
4,367,711	+		Pf6N2E2_3751	0.50	-2.2
4,367,711	+		Pf6N2E2_3751	0.50	-3.8
4,367,712	-		Pf6N2E2_3751	0.50	-4.7
4,368,032	+		Pf6N2E2_3751	0.73	-3.6
4,368,032	+		Pf6N2E2_3751	0.73	+0.3
4,368,032	+		Pf6N2E2_3751	0.73	-2.9
4,368,032	+		Pf6N2E2_3751	0.73	-4.4
4,368,032	+		Pf6N2E2_3751	0.73	-2.3
4,368,032	+		Pf6N2E2_3751	0.73	-1.9
4,368,032	+		Pf6N2E2_3751	0.73	-3.9
4,368,032	+		Pf6N2E2_3751	0.73	-3.8
4,368,032	+		Pf6N2E2_3751	0.73	-2.7
4,368,033	-		Pf6N2E2_3751	0.73	-3.0
4,368,033	-		Pf6N2E2_3751	0.73	-2.2
4,368,033	-		Pf6N2E2_3751	0.73	-3.2
4,368,033	-		Pf6N2E2_3751	0.73	-4.0
4,368,033	-		Pf6N2E2_3751	0.73	-1.2
4,368,312	-				+0.3
4,368,312	-				-1.9
4,368,312	-				-4.8
4,368,418	+				-1.7
4,368,418	+				-2.0
4,368,418	+				-4.2
4,368,418	+				-2.7
4,368,419	-				-4.4
4,368,446	+				-1.4
4,368,530	+				-3.6
4,368,531	-				-1.5
4,368,531	-				-2.9
4,368,587	+				-3.3
4,368,588	-				-1.2
4,368,588	-				+1.3
4,368,588	-				-0.0
4,368,588	-				-2.9
4,368,710	+				-3.0
4,368,744	+				-1.3
4,368,744	+				-2.9
4,368,744	+				+1.3
4,368,745	-				-1.5
4,368,745	-				-3.1
4,368,788	+				-3.2
4,368,788	+				-3.6
4,368,789	-				-4.7
4,368,840	+				-2.3
4,368,944	+		Pf6N2E2_3752	0.11	-0.4
4,368,944	+		Pf6N2E2_3752	0.11	-4.5
4,368,944	+		Pf6N2E2_3752	0.11	-2.1
4,368,945	-		Pf6N2E2_3752	0.11	-3.2
4,368,945	-		Pf6N2E2_3752	0.11	+1.3
4,369,004	+		Pf6N2E2_3752	0.12	-4.7
4,369,004	+		Pf6N2E2_3752	0.12	-0.3
4,369,005	-		Pf6N2E2_3752	0.13	-3.6
4,369,028	+		Pf6N2E2_3752	0.13	-2.9
4,369,028	+		Pf6N2E2_3752	0.13	-4.2
4,369,028	+		Pf6N2E2_3752	0.13	-2.7
4,369,028	+		Pf6N2E2_3752	0.13	-0.7
4,369,028	+		Pf6N2E2_3752	0.13	-4.2
4,369,028	+		Pf6N2E2_3752	0.13	-4.1
4,369,028	+		Pf6N2E2_3752	0.13	-2.6
4,369,029	-		Pf6N2E2_3752	0.13	-1.7
4,369,029	-		Pf6N2E2_3752	0.13	-0.3
4,369,029	-		Pf6N2E2_3752	0.13	-5.0
4,369,029	-		Pf6N2E2_3752	0.13	-3.9
4,369,029	-		Pf6N2E2_3752	0.13	-1.5
4,369,029	-		Pf6N2E2_3752	0.13	-3.2
4,369,029	-		Pf6N2E2_3752	0.13	-1.9
4,369,029	-		Pf6N2E2_3752	0.13	-1.0
4,369,029	-		Pf6N2E2_3752	0.13	-3.9
4,369,029	-		Pf6N2E2_3752	0.13	-2.3
4,369,029	-		Pf6N2E2_3752	0.13	-3.6
4,369,029	-		Pf6N2E2_3752	0.13	-2.5
4,369,186	-		Pf6N2E2_3752	0.17	-2.9
4,369,322	+		Pf6N2E2_3752	0.20	-2.1
4,369,322	+		Pf6N2E2_3752	0.20	-3.1
4,369,323	-		Pf6N2E2_3752	0.20	-4.4
4,369,472	+		Pf6N2E2_3752	0.23	-3.0
4,369,472	+		Pf6N2E2_3752	0.23	-2.3
4,369,472	+		Pf6N2E2_3752	0.23	-2.1
4,369,473	-		Pf6N2E2_3752	0.23	-3.5
4,369,473	-		Pf6N2E2_3752	0.23	-3.5
4,369,473	-		Pf6N2E2_3752	0.23	-1.5
4,369,473	-		Pf6N2E2_3752	0.23	-1.2
4,369,511	+		Pf6N2E2_3752	0.24	+1.3
4,369,511	+		Pf6N2E2_3752	0.24	-0.7
4,369,511	+		Pf6N2E2_3752	0.24	-3.8
4,369,511	+		Pf6N2E2_3752	0.24	-2.6
4,369,512	-		Pf6N2E2_3752	0.24	-3.3
4,369,778	+		Pf6N2E2_3752	0.30	-2.6
4,369,778	+		Pf6N2E2_3752	0.30	+1.3
4,369,779	-		Pf6N2E2_3752	0.30	-3.6
4,369,779	-		Pf6N2E2_3752	0.30	-4.6
4,369,779	-		Pf6N2E2_3752	0.30	-0.3
4,369,973	+		Pf6N2E2_3752	0.34	-3.6
4,369,973	+		Pf6N2E2_3752	0.34	-4.1
4,369,973	+		Pf6N2E2_3752	0.34	-3.3
4,369,974	-		Pf6N2E2_3752	0.34	+1.3
4,369,974	-		Pf6N2E2_3752	0.34	-1.3
4,370,025	-		Pf6N2E2_3752	0.35	+0.1
4,370,135	+		Pf6N2E2_3752	0.38	-1.9
4,370,136	-		Pf6N2E2_3752	0.38	-2.5
4,370,353	+		Pf6N2E2_3752	0.43	-3.1
4,370,353	+		Pf6N2E2_3752	0.43	-0.7
4,370,354	-		Pf6N2E2_3752	0.43	-3.1
4,370,444	+		Pf6N2E2_3752	0.45	-2.7
4,370,445	-		Pf6N2E2_3752	0.45	-2.9
4,370,445	-		Pf6N2E2_3752	0.45	-3.6
4,370,445	-		Pf6N2E2_3752	0.45	-2.4
4,370,462	+		Pf6N2E2_3752	0.45	-4.6
4,370,463	-		Pf6N2E2_3752	0.45	-4.2
4,370,513	+		Pf6N2E2_3752	0.46	-3.8
4,370,513	+		Pf6N2E2_3752	0.46	-2.7
4,370,513	+		Pf6N2E2_3752	0.46	-4.4
4,370,514	-		Pf6N2E2_3752	0.46	-4.7
4,370,793	-		Pf6N2E2_3752	0.53	-2.3
4,370,810	+		Pf6N2E2_3752	0.53	-3.9
4,370,810	+		Pf6N2E2_3752	0.53	-0.7
4,370,861	+		Pf6N2E2_3752	0.54	-1.0
4,370,862	-		Pf6N2E2_3752	0.54	-4.4
4,370,862	-		Pf6N2E2_3752	0.54	-3.1
4,370,877	-		Pf6N2E2_3752	0.55	-4.2
4,370,877	-		Pf6N2E2_3752	0.55	-3.0
4,370,944	+		Pf6N2E2_3752	0.56	-2.0
4,370,944	+		Pf6N2E2_3752	0.56	-1.3
4,370,945	-		Pf6N2E2_3752	0.56	-2.8
4,371,149	+		Pf6N2E2_3752	0.61	-4.4
4,371,149	+		Pf6N2E2_3752	0.61	-2.9
4,371,149	+		Pf6N2E2_3752	0.61	-2.3
4,371,150	-		Pf6N2E2_3752	0.61	+1.3
4,371,150	-		Pf6N2E2_3752	0.61	-3.2
4,371,279	+		Pf6N2E2_3752	0.64	-0.9
4,371,512	+		Pf6N2E2_3752	0.69	-2.2
4,371,512	+		Pf6N2E2_3752	0.69	+1.3
4,371,513	-		Pf6N2E2_3752	0.69	-3.1
4,371,524	+		Pf6N2E2_3752	0.69	-2.2
4,371,524	+		Pf6N2E2_3752	0.69	-2.9
4,371,524	+		Pf6N2E2_3752	0.69	-4.1
4,371,524	+		Pf6N2E2_3752	0.69	-2.9
4,371,525	-		Pf6N2E2_3752	0.69	-2.7
4,371,525	-		Pf6N2E2_3752	0.69	-3.4
4,371,525	-		Pf6N2E2_3752	0.69	-2.4
4,371,548	+		Pf6N2E2_3752	0.70	-4.9
4,371,548	+		Pf6N2E2_3752	0.70	-4.6
4,371,548	+		Pf6N2E2_3752	0.70	-2.7
4,371,548	+		Pf6N2E2_3752	0.70	-3.7
4,371,548	+		Pf6N2E2_3752	0.70	-0.7
4,371,549	-		Pf6N2E2_3752	0.70	-4.1
4,371,549	-		Pf6N2E2_3752	0.70	-3.2
4,371,623	+		Pf6N2E2_3752	0.71	-2.2
4,371,623	+		Pf6N2E2_3752	0.71	-2.7
4,371,623	+		Pf6N2E2_3752	0.71	-3.4
4,371,623	+		Pf6N2E2_3752	0.71	-3.4
4,371,623	+		Pf6N2E2_3752	0.71	-2.2
4,371,624	-		Pf6N2E2_3752	0.71	-3.0
4,371,624	-		Pf6N2E2_3752	0.71	-1.2
4,371,624	-		Pf6N2E2_3752	0.71	-3.4
4,371,624	-		Pf6N2E2_3752	0.71	-2.2
4,371,749	+		Pf6N2E2_3752	0.74	-4.9
4,371,749	+		Pf6N2E2_3752	0.74	-2.3
4,371,750	-		Pf6N2E2_3752	0.74	-3.6
4,371,914	+		Pf6N2E2_3752	0.78	-2.9
4,371,914	+		Pf6N2E2_3752	0.78	-3.4
4,371,914	+		Pf6N2E2_3752	0.78	+1.3
4,371,915	-		Pf6N2E2_3752	0.78	-1.9
4,371,921	-		Pf6N2E2_3752	0.78	-2.5
4,371,921	-		Pf6N2E2_3752	0.78	-2.6
4,371,921	-		Pf6N2E2_3752	0.78	-2.0
4,372,293	-		Pf6N2E2_3752	0.86	-4.2
4,372,293	-		Pf6N2E2_3752	0.86	+1.3
4,372,331	+		Pf6N2E2_3752	0.87	-4.3
4,372,331	+		Pf6N2E2_3752	0.87	-2.6
4,372,331	+		Pf6N2E2_3752	0.87	-1.3
4,372,331	+		Pf6N2E2_3752	0.87	-3.4
4,372,331	+		Pf6N2E2_3752	0.87	-4.0
4,372,331	+		Pf6N2E2_3752	0.87	-4.2
4,372,331	+		Pf6N2E2_3752	0.87	-3.6
4,372,331	+		Pf6N2E2_3752	0.87	-3.7
4,372,331	+		Pf6N2E2_3752	0.87	-2.6
4,372,331	+		Pf6N2E2_3752	0.87	-3.1
4,372,331	+		Pf6N2E2_3752	0.87	-3.0
4,372,332	-		Pf6N2E2_3752	0.87	-2.7
4,372,364	+		Pf6N2E2_3752	0.88	-1.3
4,372,364	+		Pf6N2E2_3752	0.88	-4.3
4,372,364	+		Pf6N2E2_3752	0.88	-4.6
4,372,364	+		Pf6N2E2_3752	0.88	-3.6
4,372,364	+		Pf6N2E2_3752	0.88	-2.7
4,372,364	+		Pf6N2E2_3752	0.88	-1.5
4,372,365	-		Pf6N2E2_3752	0.88	-1.5
4,372,365	-		Pf6N2E2_3752	0.88	-2.9
4,372,365	-		Pf6N2E2_3752	0.88	-1.5
4,372,365	-		Pf6N2E2_3752	0.88	-3.3
4,372,365	-		Pf6N2E2_3752	0.88	-1.5
4,372,643	+				-3.4
4,372,644	-				-2.4
4,372,830	+				-2.4
4,372,830	+				-4.6
4,372,830	+				-1.9
4,372,830	+				-3.0
4,372,830	+				-1.9
4,372,830	+				-2.9
4,372,830	+				-2.7
4,372,831	-				-4.2
4,372,831	-				-4.2
4,372,837	+				-1.9
4,372,838	-				-1.3
4,372,838	-				-0.3
4,372,838	-				-1.8
4,372,857	+				-3.1
4,372,858	-				-4.8
4,372,858	-				-2.8
4,372,858	-				-4.4
4,372,858	-				-2.3
4,372,880	+				-2.3
4,372,881	-				-2.7
4,372,896	+				-3.8
4,373,010	+				-2.2
4,373,010	+				-1.2
4,373,011	-				-1.8
4,373,011	-				-1.7
4,373,011	-				-1.8
4,373,011	-				-0.2
4,373,088	+				+0.4
4,373,089	-				-0.3
4,373,128	+				+0.1
4,373,142	+				+0.7
4,373,142	+				+0.4
4,373,142	+				-0.4
4,373,143	-				+0.3
4,373,143	-				+0.3
4,373,374	+				-0.1
4,373,374	+				+0.5
4,373,374	+				+0.2
4,373,374	+				+0.5
4,373,375	-				-0.4
4,373,375	-				+0.3
4,373,375	-				+0.4
4,373,375	-				-0.1
4,373,386	+				+0.4
4,373,386	+				+0.3
4,373,386	+				+0.0
4,373,386	+				+0.4
4,373,386	+				-0.7
4,373,387	-				+0.5
4,373,387	-				-1.0
4,373,387	-				-0.4
4,373,387	-				-0.7
4,373,387	-				-1.0
4,373,419	+		Pf6N2E2_3753	0.11	+2.7
4,373,419	+		Pf6N2E2_3753	0.11	+0.0
4,373,419	+		Pf6N2E2_3753	0.11	+0.5
4,373,420	-		Pf6N2E2_3753	0.11	+0.0
4,373,425	+		Pf6N2E2_3753	0.11	-0.3
4,373,425	+		Pf6N2E2_3753	0.11	-0.5
4,373,493	+		Pf6N2E2_3753	0.16	-0.4
4,373,493	+		Pf6N2E2_3753	0.16	-1.3
4,373,493	+		Pf6N2E2_3753	0.16	+0.8
4,373,494	-		Pf6N2E2_3753	0.16	+0.0
4,373,494	-		Pf6N2E2_3753	0.16	+0.3
4,373,497	+		Pf6N2E2_3753	0.16	+0.0
4,373,497	+		Pf6N2E2_3753	0.16	-0.0
4,373,497	+		Pf6N2E2_3753	0.16	-0.0
4,373,497	+		Pf6N2E2_3753	0.16	-0.4
4,373,497	+		Pf6N2E2_3753	0.16	+0.9
4,373,497	+		Pf6N2E2_3753	0.16	+0.5
4,373,497	+		Pf6N2E2_3753	0.16	+0.0
4,373,497	+		Pf6N2E2_3753	0.16	+0.4
4,373,497	+		Pf6N2E2_3753	0.16	+0.0
4,373,497	+		Pf6N2E2_3753	0.16	+0.2
4,373,497	+		Pf6N2E2_3753	0.16	-0.1
4,373,498	-		Pf6N2E2_3753	0.16	-0.4
4,373,498	-		Pf6N2E2_3753	0.16	-0.6
4,373,498	-		Pf6N2E2_3753	0.16	-0.2
4,373,498	-		Pf6N2E2_3753	0.16	+0.7
4,373,498	-		Pf6N2E2_3753	0.16	-0.4
4,373,498	-		Pf6N2E2_3753	0.16	-1.4
4,373,521	+		Pf6N2E2_3753	0.17	+0.2
4,373,522	-		Pf6N2E2_3753	0.17	-0.0
4,373,522	-		Pf6N2E2_3753	0.17	+0.2