Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3487

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
4,066,222	+				-0.3
4,066,222	+				-0.0
4,066,222	+				+0.9
4,066,222	+				+0.4
4,066,222	+				+0.6
4,066,222	+				+1.2
4,066,222	+				-0.3
4,066,222	+				+0.1
4,066,223	-				-0.1
4,066,278	-				-0.2
4,066,278	-				-1.1
4,066,587	+				-0.3
4,066,587	+				-0.3
4,066,587	+				-0.6
4,066,587	+				+0.0
4,066,588	-				-0.1
4,066,712	+				+0.6
4,066,712	+				-0.0
4,066,712	+				+0.1
4,066,712	+				+0.4
4,066,713	-				+0.6
4,066,713	-				-0.5
4,066,713	-				-0.1
4,066,813	-		Pf6N2E2_3486	0.21	+0.5
4,066,875	+		Pf6N2E2_3486	0.38	-0.2
4,066,875	+		Pf6N2E2_3486	0.38	+0.7
4,066,875	+		Pf6N2E2_3486	0.38	-0.4
4,066,875	+		Pf6N2E2_3486	0.38	-1.1
4,066,875	+		Pf6N2E2_3486	0.38	+0.4
4,066,875	+		Pf6N2E2_3486	0.38	+1.3
4,066,875	+		Pf6N2E2_3486	0.38	+0.1
4,066,875	+		Pf6N2E2_3486	0.38	-0.6
4,066,876	-		Pf6N2E2_3486	0.38	+0.0
4,066,876	-		Pf6N2E2_3486	0.38	-0.4
4,066,876	-		Pf6N2E2_3486	0.38	+1.4
4,066,876	-		Pf6N2E2_3486	0.38	+0.8
4,066,876	-		Pf6N2E2_3486	0.38	-0.7
4,066,876	-		Pf6N2E2_3486	0.38	+0.6
4,066,876	-		Pf6N2E2_3486	0.38	-0.8
4,066,876	-		Pf6N2E2_3486	0.38	-1.2
4,066,876	-		Pf6N2E2_3486	0.38	+0.2
4,066,876	-		Pf6N2E2_3486	0.38	-0.7
4,067,085	+				-0.5
4,067,085	+				-0.2
4,067,085	+				+0.3
4,067,085	+				-1.2
4,067,085	+				-0.4
4,067,085	+				+1.0
4,067,085	+				-0.6
4,067,085	+				+1.5
4,067,086	-				+0.8
4,067,086	-				-0.9
4,067,086	-				-0.2
4,067,086	-				-0.2
4,067,086	-				-0.5
4,067,086	-				+1.0
4,067,192	-				-0.1
4,067,192	-				-0.5
4,067,192	-				-0.6
4,067,192	-				-0.1
4,067,202	+				-1.0
4,067,202	+				+0.5
4,067,202	+				+2.3
4,067,202	+				+0.8
4,067,203	-				-0.2
4,067,203	-				+0.3
4,067,244	+				+0.1
4,067,415	-				-1.1
4,067,415	-				-1.0
4,067,415	-				-0.3
4,067,415	-				-1.2
4,067,415	-				-1.0
4,067,415	-				-3.0
4,067,416	+				-0.4
4,067,416	+				+0.1
4,067,417	-				-0.4
4,067,417	-				-3.8
4,067,417	-				+1.4
4,067,688	+		Pf6N2E2_3487	0.20	-0.9
4,067,724	+		Pf6N2E2_3487	0.21	-1.1
4,067,725	-		Pf6N2E2_3487	0.21	-0.7
4,067,828	+		Pf6N2E2_3487	0.25	-2.7
4,067,921	+		Pf6N2E2_3487	0.29	-0.9
4,067,922	-		Pf6N2E2_3487	0.29	-1.2
4,067,963	+		Pf6N2E2_3487	0.31	-3.1
4,067,963	+		Pf6N2E2_3487	0.31	-2.6
4,067,964	-		Pf6N2E2_3487	0.31	-1.5
4,067,964	-		Pf6N2E2_3487	0.31	-1.0
4,067,982	+		Pf6N2E2_3487	0.32	-0.4
4,067,982	+		Pf6N2E2_3487	0.32	-2.4
4,067,998	-		Pf6N2E2_3487	0.33	-1.6
4,068,011	+		Pf6N2E2_3487	0.33	-0.9
4,068,011	+		Pf6N2E2_3487	0.33	-2.0
4,068,012	-		Pf6N2E2_3487	0.33	-3.6
4,068,192	+		Pf6N2E2_3487	0.41	-1.0
4,068,193	-		Pf6N2E2_3487	0.41	-1.2
4,068,312	+		Pf6N2E2_3487	0.46	-2.4
4,068,366	+		Pf6N2E2_3487	0.48	-1.1
4,068,366	+		Pf6N2E2_3487	0.48	-3.1
4,068,367	-		Pf6N2E2_3487	0.48	-1.6
4,068,367	-		Pf6N2E2_3487	0.48	-1.0
4,068,482	+		Pf6N2E2_3487	0.53	-0.6
4,068,482	+		Pf6N2E2_3487	0.53	-1.8
4,068,483	-		Pf6N2E2_3487	0.53	-0.1
4,068,528	+		Pf6N2E2_3487	0.55	-1.7
4,068,528	+		Pf6N2E2_3487	0.55	-2.0
4,068,528	+		Pf6N2E2_3487	0.55	-1.1
4,068,529	-		Pf6N2E2_3487	0.55	-2.5
4,068,698	-		Pf6N2E2_3487	0.62	-1.3
4,069,093	-		Pf6N2E2_3487	0.78	-2.0
4,069,424	+				-2.6
4,069,424	+				+2.4
4,069,425	-				-3.2
4,069,425	-				-0.4
4,069,463	+				-0.6
4,069,464	-				-0.2
4,069,464	-				-2.2
4,069,464	-				-0.7
4,069,465	+				-1.2
4,069,465	+				-2.6
4,069,466	-				-2.6
4,069,466	-				-0.2
4,069,663	+		Pf6N2E2_3488	0.13	+0.3
4,069,663	+		Pf6N2E2_3488	0.13	-0.5
4,069,666	+		Pf6N2E2_3488	0.14	+0.4
4,069,666	+		Pf6N2E2_3488	0.14	+1.4
4,069,666	+		Pf6N2E2_3488	0.14	+0.6
4,069,667	-		Pf6N2E2_3488	0.14	-0.2
4,069,667	-		Pf6N2E2_3488	0.14	-2.3
4,069,667	-		Pf6N2E2_3488	0.14	+0.4
4,069,667	-		Pf6N2E2_3488	0.14	-0.2
4,069,723	+		Pf6N2E2_3488	0.28	+0.0
4,070,050	-				-0.3
4,070,066	+				+2.4
4,070,088	+				+3.0
4,070,094	+				+0.2
4,070,094	+				+0.6
4,070,094	+				-0.4
4,070,094	+				+0.2
4,070,095	-				-1.3
4,070,095	-				-0.6
4,070,095	-				+0.8
4,070,095	-				-0.5
4,070,269	+				+0.1
4,070,269	+				+0.4
4,070,269	+				-0.3
4,070,269	+				+0.0
4,070,270	-				-0.2
4,070,284	-				+0.4
4,070,510	+		Pf6N2E2_3489	0.22	+0.3
4,070,510	+		Pf6N2E2_3489	0.22	+0.3
4,070,510	+		Pf6N2E2_3489	0.22	+0.4
4,070,510	+		Pf6N2E2_3489	0.22	-0.8
4,070,511	-		Pf6N2E2_3489	0.22	-0.4
4,070,511	-		Pf6N2E2_3489	0.22	-0.2
4,070,511	-		Pf6N2E2_3489	0.22	-0.0
4,070,511	-		Pf6N2E2_3489	0.22	-0.0
4,070,534	+		Pf6N2E2_3489	0.25	+0.0
4,070,534	+		Pf6N2E2_3489	0.25	+0.9
4,070,535	-		Pf6N2E2_3489	0.25	+0.1
4,070,535	-		Pf6N2E2_3489	0.25	+0.3
4,070,573	+		Pf6N2E2_3489	0.29	+0.9
4,070,574	-		Pf6N2E2_3489	0.29	-0.4