Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3379

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
3,908,429	-				+0.2
3,908,429	-				+0.2
3,908,429	-				+2.4
3,908,445	-				-0.3
3,908,445	-				+1.4
3,908,445	-				+1.1
3,908,445	-				-1.3
3,908,445	-				+0.0
3,908,482	-				-0.0
3,908,482	-				+0.4
3,908,482	-				+0.6
3,908,641	+				+0.5
3,909,410	+				+1.4
3,909,410	+				+3.9
3,909,410	+				+2.4
3,909,410	+				+1.4
3,909,410	+				+3.9
3,909,410	+				+4.2
3,909,410	+				+3.2
3,909,410	+				+3.4
3,909,410	+				+4.1
3,909,410	+				+3.5
3,909,411	-		Pf6N2E2_3379	0.10	+5.0
3,909,411	-		Pf6N2E2_3379	0.10	+3.3
3,909,411	-		Pf6N2E2_3379	0.10	+4.5
3,909,411	-		Pf6N2E2_3379	0.10	+4.2
3,909,411	-		Pf6N2E2_3379	0.10	+4.0
3,909,411	-		Pf6N2E2_3379	0.10	+4.3
3,909,417	+		Pf6N2E2_3379	0.11	+4.5
3,909,417	+		Pf6N2E2_3379	0.11	+3.7
3,909,417	+		Pf6N2E2_3379	0.11	+4.0
3,909,417	+		Pf6N2E2_3379	0.11	+3.2
3,909,417	+		Pf6N2E2_3379	0.11	+4.8
3,909,417	+		Pf6N2E2_3379	0.11	+3.6
3,909,417	+		Pf6N2E2_3379	0.11	+3.3
3,909,417	+		Pf6N2E2_3379	0.11	+4.4
3,909,418	-		Pf6N2E2_3379	0.11	+1.4
3,909,418	-		Pf6N2E2_3379	0.11	+5.4
3,909,418	-		Pf6N2E2_3379	0.11	+4.9
3,909,418	-		Pf6N2E2_3379	0.11	+5.0
3,909,418	-		Pf6N2E2_3379	0.11	+5.5
3,909,418	-		Pf6N2E2_3379	0.11	+5.2
3,909,473	+		Pf6N2E2_3379	0.18	+4.9
3,909,473	+		Pf6N2E2_3379	0.18	+4.8
3,909,473	+		Pf6N2E2_3379	0.18	+4.9
3,909,473	+		Pf6N2E2_3379	0.18	+4.9
3,909,473	+		Pf6N2E2_3379	0.18	+5.5
3,909,473	+		Pf6N2E2_3379	0.18	+5.0
3,909,474	-		Pf6N2E2_3379	0.18	+5.3
3,909,474	-		Pf6N2E2_3379	0.18	+3.4
3,909,474	-		Pf6N2E2_3379	0.18	+5.0
3,909,474	-		Pf6N2E2_3379	0.18	+5.6
3,909,527	+		Pf6N2E2_3379	0.25	+6.1
3,909,527	+		Pf6N2E2_3379	0.25	+4.9
3,909,527	+		Pf6N2E2_3379	0.25	+4.8
3,909,527	+		Pf6N2E2_3379	0.25	+5.3
3,909,528	-		Pf6N2E2_3379	0.25	+4.9
3,909,528	-		Pf6N2E2_3379	0.25	+5.5
3,909,528	-		Pf6N2E2_3379	0.25	+5.4
3,909,528	-		Pf6N2E2_3379	0.25	+5.0
3,909,528	-		Pf6N2E2_3379	0.25	+4.7
3,909,528	-		Pf6N2E2_3379	0.25	+5.5
3,909,528	-		Pf6N2E2_3379	0.25	+4.6
3,909,606	+		Pf6N2E2_3379	0.35	+4.2
3,909,690	-		Pf6N2E2_3379	0.46	+4.9
3,909,762	-		Pf6N2E2_3379	0.56	+5.0
3,909,762	-		Pf6N2E2_3379	0.56	+3.4
3,909,764	+		Pf6N2E2_3379	0.56	+5.8
3,909,764	+		Pf6N2E2_3379	0.56	+4.0
3,909,765	-		Pf6N2E2_3379	0.56	+5.0
3,909,765	-		Pf6N2E2_3379	0.56	+6.0
3,909,884	+		Pf6N2E2_3379	0.72	+5.2
3,909,884	+		Pf6N2E2_3379	0.72	+4.6
3,909,884	+		Pf6N2E2_3379	0.72	+5.2
3,909,884	+		Pf6N2E2_3379	0.72	+3.4
3,909,884	+		Pf6N2E2_3379	0.72	+5.7
3,909,884	+		Pf6N2E2_3379	0.72	+2.4
3,909,885	-		Pf6N2E2_3379	0.72	+5.1
3,909,885	-		Pf6N2E2_3379	0.72	+5.0
3,909,885	-		Pf6N2E2_3379	0.72	+5.1
3,909,885	-		Pf6N2E2_3379	0.72	+3.2
3,909,885	-		Pf6N2E2_3379	0.72	+5.1
3,909,885	-		Pf6N2E2_3379	0.72	+3.4
3,909,885	-		Pf6N2E2_3379	0.72	+5.1
3,909,885	-		Pf6N2E2_3379	0.72	+6.0
3,910,101	+				+1.4
3,910,143	-				-1.6
3,910,143	-				+0.0
3,910,177	-				+1.4
3,910,189	+				+5.1
3,910,189	+				+6.0
3,910,189	+				+4.8
3,910,189	+				+4.9
3,910,189	+				+5.5
3,910,189	+				+5.4
3,910,190	-				+0.7
3,910,190	-				-0.7
3,910,190	-				-1.9
3,910,190	-				-0.1
3,910,221	-				+0.8
3,910,221	-				-0.8
3,910,221	-				+0.1
3,910,349	-				-1.9
3,910,385	+				+0.4
3,910,385	+				-0.4
3,910,386	-				-0.4
3,910,386	-				-1.2
3,910,386	-				-0.6
3,910,386	-				-0.5
3,910,386	-				-1.8
3,910,440	+				+0.4
3,910,440	+				+0.3
3,910,440	+				-0.8
3,910,441	-				+1.3
3,910,540	+		Pf6N2E2_3380	0.11	-0.9
3,910,541	-		Pf6N2E2_3380	0.11	+0.3
3,910,541	-		Pf6N2E2_3380	0.11	-1.4
3,910,541	-		Pf6N2E2_3380	0.11	-1.0
3,910,541	-		Pf6N2E2_3380	0.11	+0.4
3,910,574	+		Pf6N2E2_3380	0.13	+0.6
3,910,586	+		Pf6N2E2_3380	0.13	-0.1
3,910,826	+		Pf6N2E2_3380	0.27	+0.5
3,910,827	-		Pf6N2E2_3380	0.27	-1.7
3,911,078	+		Pf6N2E2_3380	0.42	+1.4
3,911,078	+		Pf6N2E2_3380	0.42	+0.4
3,911,078	+		Pf6N2E2_3380	0.42	-2.2
3,911,079	-		Pf6N2E2_3380	0.42	+0.4
3,911,079	-		Pf6N2E2_3380	0.42	-0.2
3,911,079	-		Pf6N2E2_3380	0.42	-0.9
3,911,079	-		Pf6N2E2_3380	0.42	-0.5
3,911,079	-		Pf6N2E2_3380	0.42	-0.3