Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2588

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
3,044,978	+		Pf6N2E2_2587	0.45	+1.1
3,044,978	+		Pf6N2E2_2587	0.45	+0.1
3,044,978	+		Pf6N2E2_2587	0.45	-0.1
3,044,978	+		Pf6N2E2_2587	0.45	+0.1
3,044,979	-		Pf6N2E2_2587	0.45	-0.3
3,044,979	-		Pf6N2E2_2587	0.45	-0.3
3,044,979	-		Pf6N2E2_2587	0.45	+0.1
3,044,979	-		Pf6N2E2_2587	0.45	+0.8
3,044,979	-		Pf6N2E2_2587	0.45	+1.2
3,044,979	-		Pf6N2E2_2587	0.45	+0.3
3,044,979	-		Pf6N2E2_2587	0.45	-0.4
3,045,053	+		Pf6N2E2_2587	0.49	+1.8
3,045,083	-		Pf6N2E2_2587	0.51	+0.1
3,045,141	+		Pf6N2E2_2587	0.54	-0.4
3,045,141	+		Pf6N2E2_2587	0.54	-0.6
3,045,141	+		Pf6N2E2_2587	0.54	+0.2
3,045,141	+		Pf6N2E2_2587	0.54	-0.7
3,045,142	-		Pf6N2E2_2587	0.55	-0.7
3,045,142	-		Pf6N2E2_2587	0.55	-1.3
3,045,142	-		Pf6N2E2_2587	0.55	+0.4
3,045,379	+		Pf6N2E2_2587	0.68	-0.1
3,045,379	+		Pf6N2E2_2587	0.68	+0.6
3,045,380	-		Pf6N2E2_2587	0.68	-0.4
3,045,394	+		Pf6N2E2_2587	0.69	-0.0
3,045,394	+		Pf6N2E2_2587	0.69	-0.4
3,045,394	+		Pf6N2E2_2587	0.69	-0.5
3,045,395	-		Pf6N2E2_2587	0.69	-0.2
3,045,478	+		Pf6N2E2_2587	0.74	+1.4
3,045,478	+		Pf6N2E2_2587	0.74	-0.2
3,045,478	+		Pf6N2E2_2587	0.74	-0.9
3,045,478	+		Pf6N2E2_2587	0.74	-0.5
3,045,479	-		Pf6N2E2_2587	0.74	+0.2
3,045,479	-		Pf6N2E2_2587	0.74	+0.4
3,045,479	-		Pf6N2E2_2587	0.74	-1.1
3,045,479	-		Pf6N2E2_2587	0.74	-0.4
3,045,479	-		Pf6N2E2_2587	0.74	+0.2
3,045,583	+		Pf6N2E2_2587	0.80	-0.9
3,045,779	-				-0.6
3,046,034	+		Pf6N2E2_2588	0.42	+0.4
3,046,035	-		Pf6N2E2_2588	0.42	-2.1
3,046,035	-		Pf6N2E2_2588	0.42	+0.4
3,046,071	+		Pf6N2E2_2588	0.55	-1.2
3,046,072	-		Pf6N2E2_2588	0.56	+0.4
3,046,072	-		Pf6N2E2_2588	0.56	-0.2
3,046,252	+				+1.4
3,046,252	+				-0.3
3,046,253	-				-0.6
3,046,253	-				-1.9
3,046,253	-				+0.3
3,046,253	-				-1.2
3,046,253	-				+0.1
3,046,253	-				+1.4
3,046,258	+				-0.0
3,046,258	+				-1.8
3,046,258	+				+0.3
3,046,259	-				-0.8
3,046,259	-				-1.4
3,046,259	-				-0.9
3,046,259	-				+0.2
3,046,259	-				-0.6
3,046,259	-				-1.4
3,046,259	-				+0.7
3,046,267	+				-0.7
3,046,268	-				-1.6
3,046,278	-				+1.4
3,046,278	-				-0.0
3,046,420	+		Pf6N2E2_2589	0.20	+0.8
3,046,421	-		Pf6N2E2_2589	0.20	+0.9
3,046,422	+		Pf6N2E2_2589	0.20	+0.9
3,046,422	+		Pf6N2E2_2589	0.20	+1.0
3,046,422	+		Pf6N2E2_2589	0.20	-0.0
3,046,423	-		Pf6N2E2_2589	0.20	+0.9
3,046,423	-		Pf6N2E2_2589	0.20	+1.0
3,046,423	-		Pf6N2E2_2589	0.20	+1.2
3,046,630	-		Pf6N2E2_2589	0.66	+0.7
3,046,789	-				+0.5
3,046,789	-				+0.7
3,046,813	+				+1.3
3,046,814	-				+0.6
3,046,938	+		Pf6N2E2_2590	0.11	+1.2
3,046,939	-		Pf6N2E2_2590	0.11	+1.0
3,046,939	-		Pf6N2E2_2590	0.11	+0.7
3,046,939	-		Pf6N2E2_2590	0.11	+1.3
3,046,939	-		Pf6N2E2_2590	0.11	+1.2
3,046,986	+		Pf6N2E2_2590	0.15	+0.6
3,046,986	+		Pf6N2E2_2590	0.15	+0.9
3,046,987	-		Pf6N2E2_2590	0.15	+0.7
3,046,987	-		Pf6N2E2_2590	0.15	+1.5
3,047,188	+				+2.4