Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2506

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
2,957,600	+				-0.2
2,957,601	-				-0.3
2,957,601	-				-0.9
2,957,620	+				-0.3
2,957,701	+				-0.0
2,957,702	-				-0.9
2,957,702	-				-0.7
2,957,704	+				-0.8
2,957,704	+				+0.5
2,957,718	+				+1.4
2,957,775	+				-0.8
2,957,776	-				+0.4
2,957,790	+				-1.0
2,957,790	+				+1.1
2,957,790	+				-1.0
2,957,790	+				-0.4
2,957,790	+				-0.1
2,957,790	+				+1.6
2,957,790	+				-0.1
2,957,791	-				-0.6
2,957,791	-				-0.1
2,957,815	+				+1.2
2,957,815	+				-1.6
2,957,815	+				+0.2
2,957,816	-				-0.5
2,957,826	-				-0.8
2,957,889	-				-0.3
2,957,891	-				-0.2
2,957,891	-				-0.5
2,957,891	-				+0.2
2,957,891	-				-0.4
2,957,926	+				+1.4
2,957,940	+				+0.4
2,957,940	+				-0.5
2,957,941	-				-0.7
2,957,946	-				-0.9
2,957,970	-				-1.8
2,958,002	+				-1.1
2,958,016	-				-1.6
2,958,016	-				-0.6
2,958,044	+				+0.1
2,958,045	-				-1.4
2,958,045	-				-0.3
2,958,135	+				+1.4
2,958,135	+				+1.4
2,958,135	+				+0.3
2,958,135	+				+1.4
2,958,135	+				+0.1
2,958,135	+				+0.4
2,958,136	-				+0.4
2,958,136	-				+1.4
2,958,289	+		Pf6N2E2_2506	0.17	-0.0
2,958,323	-		Pf6N2E2_2506	0.18	-3.0
2,958,331	+		Pf6N2E2_2506	0.19	-2.0
2,958,331	+		Pf6N2E2_2506	0.19	-2.0
2,958,331	+		Pf6N2E2_2506	0.19	+1.4
2,958,332	-		Pf6N2E2_2506	0.19	-2.1
2,958,332	-		Pf6N2E2_2506	0.19	-2.5
2,958,332	-		Pf6N2E2_2506	0.19	+0.4
2,958,332	-		Pf6N2E2_2506	0.19	-2.6
2,958,367	+		Pf6N2E2_2506	0.20	-1.6
2,958,402	-		Pf6N2E2_2506	0.22	-1.9
2,958,472	+		Pf6N2E2_2506	0.26	+1.4
2,958,491	-		Pf6N2E2_2506	0.26	-1.4
2,958,493	+		Pf6N2E2_2506	0.27	+0.4
2,958,494	-		Pf6N2E2_2506	0.27	+1.4
2,958,562	+		Pf6N2E2_2506	0.30	+0.7
2,958,563	-		Pf6N2E2_2506	0.30	-0.9
2,958,563	-		Pf6N2E2_2506	0.30	+1.4
2,958,563	-		Pf6N2E2_2506	0.30	-1.2
2,958,595	+		Pf6N2E2_2506	0.31	-1.3
2,958,596	-		Pf6N2E2_2506	0.32	-2.3
2,958,622	-		Pf6N2E2_2506	0.33	+1.4
2,958,667	-		Pf6N2E2_2506	0.35	+1.4
2,958,667	-		Pf6N2E2_2506	0.35	-1.6
2,958,728	-		Pf6N2E2_2506	0.38	-3.1
2,958,754	-		Pf6N2E2_2506	0.39	-2.4
2,958,754	-		Pf6N2E2_2506	0.39	-0.6
2,958,754	-		Pf6N2E2_2506	0.39	-0.4
2,958,754	-		Pf6N2E2_2506	0.39	-1.2
2,958,764	-		Pf6N2E2_2506	0.40	+1.4
2,958,764	-		Pf6N2E2_2506	0.40	-0.8
2,958,764	-		Pf6N2E2_2506	0.40	-3.8
2,958,780	+		Pf6N2E2_2506	0.40	-1.6
2,958,781	-		Pf6N2E2_2506	0.40	-0.5
2,958,781	-		Pf6N2E2_2506	0.40	+1.0
2,958,783	-		Pf6N2E2_2506	0.41	-2.4
2,958,798	-		Pf6N2E2_2506	0.41	+1.4
2,958,798	-		Pf6N2E2_2506	0.41	-2.5
2,958,931	-		Pf6N2E2_2506	0.48	-1.4
2,958,949	-		Pf6N2E2_2506	0.49	-1.9
2,958,970	-		Pf6N2E2_2506	0.50	+0.4
2,958,970	-		Pf6N2E2_2506	0.50	-0.4
2,959,056	+		Pf6N2E2_2506	0.54	-3.1
2,959,056	+		Pf6N2E2_2506	0.54	-1.6
2,959,056	+		Pf6N2E2_2506	0.54	-1.2
2,959,056	+		Pf6N2E2_2506	0.54	-3.4
2,959,056	+		Pf6N2E2_2506	0.54	-1.6
2,959,056	+		Pf6N2E2_2506	0.54	-0.2
2,959,056	+		Pf6N2E2_2506	0.54	-1.5
2,959,056	+		Pf6N2E2_2506	0.54	+1.4
2,959,057	-		Pf6N2E2_2506	0.54	-1.8
2,959,057	-		Pf6N2E2_2506	0.54	-2.9
2,959,057	-		Pf6N2E2_2506	0.54	-0.6
2,959,057	-		Pf6N2E2_2506	0.54	-1.9
2,959,057	-		Pf6N2E2_2506	0.54	-1.4
2,959,057	-		Pf6N2E2_2506	0.54	-1.2
2,959,057	-		Pf6N2E2_2506	0.54	-2.1
2,959,057	-		Pf6N2E2_2506	0.54	-3.1
2,959,057	-		Pf6N2E2_2506	0.54	-1.8
2,959,057	-		Pf6N2E2_2506	0.54	-0.6
2,959,210	+		Pf6N2E2_2506	0.61	-0.9
2,959,219	+		Pf6N2E2_2506	0.62	-0.2
2,959,228	-		Pf6N2E2_2506	0.62	-0.2
2,959,302	+		Pf6N2E2_2506	0.66	-2.9
2,959,303	-		Pf6N2E2_2506	0.66	+1.4
2,959,316	+		Pf6N2E2_2506	0.66	-1.8
2,959,316	+		Pf6N2E2_2506	0.66	-0.2
2,959,317	-		Pf6N2E2_2506	0.66	+1.4
2,959,317	-		Pf6N2E2_2506	0.66	-1.2
2,959,350	+		Pf6N2E2_2506	0.68	-1.9
2,959,523	+		Pf6N2E2_2506	0.76	+1.4
2,959,524	-		Pf6N2E2_2506	0.76	-1.9
2,959,612	-		Pf6N2E2_2506	0.81	-1.6
2,959,612	-		Pf6N2E2_2506	0.81	-1.9
2,959,623	-		Pf6N2E2_2506	0.81	-1.0
2,959,628	+		Pf6N2E2_2506	0.81	-1.7
2,959,629	-		Pf6N2E2_2506	0.82	-1.6
2,959,645	+		Pf6N2E2_2506	0.82	-2.9
2,959,681	-		Pf6N2E2_2506	0.84	-1.9
2,959,681	-		Pf6N2E2_2506	0.84	-0.3
2,959,681	-		Pf6N2E2_2506	0.84	-1.8
2,959,681	-		Pf6N2E2_2506	0.84	-1.5
2,959,704	-		Pf6N2E2_2506	0.85	-1.6
2,959,722	-		Pf6N2E2_2506	0.86	+0.4
2,959,808	-				-1.3
2,959,808	-				-2.1
2,959,808	-				+0.1
2,959,808	-				-2.4
2,959,808	-				-2.1
2,959,808	-				-0.8
2,959,815	+				+1.4
2,959,815	+				-2.7
2,959,816	-				-2.6
2,959,820	-				-1.9
2,959,859	-				-1.6
2,959,859	-				-1.3
2,959,859	-				+0.8
2,959,859	-				-0.3
2,959,894	-				-1.8
2,959,927	+				+1.4
2,959,928	-				+0.0
2,959,928	-				-0.2
2,959,928	-				-2.7
2,959,928	-				-2.1
2,959,928	-				-0.6
2,959,928	-				-0.9
2,959,928	-				-0.3
2,959,928	-				-2.4
2,959,933	-				-2.3
2,959,939	-				-2.2
2,959,939	-				-0.5
2,959,939	-				-2.2
2,959,942	+				-0.4
2,959,943	-				-0.7
2,959,943	-				-1.3
2,959,943	-				-0.9
2,959,943	-				-0.7
2,959,943	-				-1.1
2,959,943	-				+1.4
2,959,943	-				-0.2
2,959,989	-				-0.1
2,959,989	-				+0.3
2,959,989	-				-0.5
2,959,989	-				-0.5
2,960,056	+				+1.4
2,960,056	+				-1.9
2,960,056	+				-2.6
2,960,057	-				-0.4
2,960,098	+				-0.6
2,960,185	+		Pf6N2E2_2507	0.20	+0.4
2,960,186	-		Pf6N2E2_2507	0.21	-2.2
2,960,186	-		Pf6N2E2_2507	0.21	-0.4
2,960,191	-		Pf6N2E2_2507	0.21	-0.7
2,960,252	+		Pf6N2E2_2507	0.31	+1.4
2,960,253	-		Pf6N2E2_2507	0.31	-3.2
2,960,276	+		Pf6N2E2_2507	0.34	-0.6
2,960,277	-		Pf6N2E2_2507	0.35	-3.1
2,960,279	-		Pf6N2E2_2507	0.35	-0.4
2,960,279	-		Pf6N2E2_2507	0.35	-1.4
2,960,363	-		Pf6N2E2_2507	0.48	-1.5
2,960,363	-		Pf6N2E2_2507	0.48	+0.2
2,960,363	-		Pf6N2E2_2507	0.48	-3.2
2,960,452	-		Pf6N2E2_2507	0.62	-1.6
2,960,452	-		Pf6N2E2_2507	0.62	-3.4
2,960,520	+		Pf6N2E2_2507	0.72	-1.2
2,960,521	-		Pf6N2E2_2507	0.72	-1.4
2,960,621	+		Pf6N2E2_2507	0.88	-1.6
2,960,660	-				-1.4
2,960,722	+				-0.2
2,960,723	-				+1.4
2,960,732	-				-1.5
2,960,732	-				-2.1
2,960,782	+		Pf6N2E2_2508	0.20	-2.0
2,960,782	+		Pf6N2E2_2508	0.20	+1.4
2,960,782	+				-1.2
2,960,782	+		Pf6N2E2_2508	0.20	-1.4
2,960,783	-		Pf6N2E2_2508	0.21	-0.4
2,960,783	-		Pf6N2E2_2508	0.21	-1.3
2,960,783	-		Pf6N2E2_2508	0.21	-2.6
2,960,783	-		Pf6N2E2_2508	0.21	-0.6
2,960,783	-		Pf6N2E2_2508	0.21	-2.9
2,960,783	-		Pf6N2E2_2508	0.21	-2.9
2,960,959	-				-1.8
2,960,959	-				-1.4
2,960,988	+				+0.2
2,960,999	+				-0.8
2,961,000	-				-1.8
2,961,000	-				-1.6