Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2017

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
2,403,267	-		Pf6N2E2_2016	0.62	-1.1
2,403,344	+		Pf6N2E2_2016	0.66	+0.7
2,403,345	-		Pf6N2E2_2016	0.66	-0.1
2,403,400	+		Pf6N2E2_2016	0.69	+0.7
2,403,400	+		Pf6N2E2_2016	0.69	-0.2
2,403,418	+		Pf6N2E2_2016	0.70	-0.9
2,403,421	+		Pf6N2E2_2016	0.70	-0.7
2,403,422	-		Pf6N2E2_2016	0.70	+0.6
2,403,422	-		Pf6N2E2_2016	0.70	-0.6
2,403,545	+		Pf6N2E2_2016	0.76	+0.5
2,403,545	+		Pf6N2E2_2016	0.76	+0.3
2,403,546	-		Pf6N2E2_2016	0.76	-0.2
2,403,546	-		Pf6N2E2_2016	0.76	-1.6
2,403,675	-		Pf6N2E2_2016	0.82	-0.4
2,403,675	-		Pf6N2E2_2016	0.82	+1.5
2,403,703	+		Pf6N2E2_2016	0.84	-0.2
2,403,710	+		Pf6N2E2_2016	0.84	-2.8
2,403,710	+		Pf6N2E2_2016	0.84	-0.6
2,403,710	+		Pf6N2E2_2016	0.84	+0.5
2,403,711	-		Pf6N2E2_2016	0.84	+1.5
2,403,711	-		Pf6N2E2_2016	0.84	-0.9
2,403,711	-		Pf6N2E2_2016	0.84	+1.5
2,403,711	-		Pf6N2E2_2016	0.84	+1.1
2,403,711	-		Pf6N2E2_2016	0.84	+0.5
2,403,711	-		Pf6N2E2_2016	0.84	+0.1
2,403,724	+		Pf6N2E2_2016	0.85	-0.5
2,403,730	+		Pf6N2E2_2016	0.85	-0.3
2,403,730	+		Pf6N2E2_2016	0.85	-0.4
2,403,730	+		Pf6N2E2_2016	0.85	+1.3
2,403,731	-		Pf6N2E2_2016	0.85	+0.6
2,403,731	-		Pf6N2E2_2016	0.85	-0.5
2,403,731	-		Pf6N2E2_2016	0.85	+1.5
2,403,731	-		Pf6N2E2_2016	0.85	+0.4
2,403,731	-		Pf6N2E2_2016	0.85	-0.4
2,403,731	-		Pf6N2E2_2016	0.85	+0.1
2,403,812	-		Pf6N2E2_2016	0.89	+1.5
2,404,014	+				-0.2
2,404,014	+				-1.3
2,404,014	+				+0.1
2,404,014	+				-0.1
2,404,014	+				-0.4
2,404,014	+				+1.1
2,404,014	+				+1.2
2,404,014	+				+0.6
2,404,015	-				+2.5
2,404,015	-				+0.5
2,404,015	-				+1.5
2,404,015	-				+0.5
2,404,015	-				-3.4
2,404,015	-				-0.4
2,404,041	+				+0.1
2,404,045	+				+1.7
2,404,045	+				-0.2
2,404,046	-				+0.1
2,404,046	-				+0.6
2,404,046	-				+0.8
2,404,064	+				+0.7
2,404,065	-				+0.6
2,404,140	+				+1.3
2,404,140	+				+0.1
2,404,140	+				-0.2
2,404,141	-				-0.3
2,404,141	-				-0.6
2,404,141	-				+0.2
2,404,141	-				-1.4
2,404,141	-				+0.0
2,404,141	-				-0.8
2,404,144	+				+0.6
2,404,144	+				-0.1
2,404,145	-				-0.2
2,404,145	-				+0.5
2,404,271	+		Pf6N2E2_2017	0.25	-0.8
2,404,449	+		Pf6N2E2_2017	0.88	-1.2
2,404,450	-		Pf6N2E2_2017	0.88	-0.1
2,404,474	+				+0.1
2,404,485	+				-0.2
2,404,485	+				-0.1
2,404,486	-				+1.1
2,404,486	-				+0.1
2,404,570	+		Pf6N2E2_2018	0.59	-1.1
2,404,571	-		Pf6N2E2_2018	0.59	-0.8
2,404,630	+				+0.8
2,404,631	-				-1.3
2,404,631	-				+0.1
2,404,654	+				-0.2
2,404,654	+				-0.2
2,404,654	+				+0.6
2,404,654	+				+1.5
2,404,654	+				+0.6
2,404,654	+				+0.2
2,404,655	-				+0.8
2,404,665	+				+1.5
2,404,665	+				+0.5
2,404,665	+				-0.8
2,404,665	+				+0.4
2,404,666	-				+0.4
2,404,695	-				+0.3
2,404,695	-				-0.4
2,404,695	-				+0.5
2,404,701	+				-0.9
2,404,702	-				+0.4
2,404,702	-				+2.5
2,404,732	-				-0.9
2,404,770	+				+1.5
2,404,770	+				-1.1
2,404,770	+				-0.6
2,404,861	+				+0.4
2,404,861	+				-0.1
2,404,861	+				-0.3
2,404,862	-				+0.8
2,404,862	-				-0.0
2,404,862	-				+0.7
2,404,867	+				+0.9
2,404,867	+				-1.1
2,404,868	-				-3.2
2,404,868	-				-2.0
2,404,924	+				-0.8
2,404,924	+				-0.7
2,404,925	-				+0.1
2,404,928	+				-0.7
2,404,928	+				+0.6
2,404,928	+				-1.0
2,404,929	-				-0.5
2,404,929	-				+0.6
2,404,976	+				-1.4
2,404,976	+				-0.0
2,404,977	-				-1.9
2,405,092	-		Pf6N2E2_2019	0.11	+0.5
2,405,108	+		Pf6N2E2_2019	0.12	+0.9
2,405,108	+		Pf6N2E2_2019	0.12	-1.3
2,405,108	+		Pf6N2E2_2019	0.12	+0.9
2,405,108	+		Pf6N2E2_2019	0.12	+0.0
2,405,109	-		Pf6N2E2_2019	0.12	-0.8
2,405,109	-		Pf6N2E2_2019	0.12	-0.3
2,405,109	-		Pf6N2E2_2019	0.12	+0.8
2,405,117	+		Pf6N2E2_2019	0.12	-0.0
2,405,118	-		Pf6N2E2_2019	0.12	-0.1
2,405,118	-		Pf6N2E2_2019	0.12	+0.5
2,405,280	-		Pf6N2E2_2019	0.16	-0.4
2,405,280	-		Pf6N2E2_2019	0.16	+1.5
2,405,282	+		Pf6N2E2_2019	0.16	-0.8
2,405,283	-		Pf6N2E2_2019	0.16	+0.9
2,405,283	-		Pf6N2E2_2019	0.16	+0.3
2,405,286	+		Pf6N2E2_2019	0.16	+0.4
2,405,287	-		Pf6N2E2_2019	0.16	-0.3
2,405,287	-		Pf6N2E2_2019	0.16	-0.3
2,405,304	+		Pf6N2E2_2019	0.17	-1.0
2,405,440	+		Pf6N2E2_2019	0.20	-0.9
2,405,441	-		Pf6N2E2_2019	0.20	-0.7
2,405,441	-		Pf6N2E2_2019	0.20	-0.2