Experiment: Nitrate reduction, replicate A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1931 and Pf6N2E2_1932 are separated by 121 nucleotides Pf6N2E2_1932 and Pf6N2E2_1933 are separated by 202 nucleotides
Pf6N2E2_1931 - Methyl-accepting chemotaxis protein, at 2,286,861 to 2,288,699
_1931
Pf6N2E2_1932 - Transcriptional regulator, IclR family, at 2,288,821 to 2,289,564
_1932
Pf6N2E2_1933 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 2,289,767 to 2,290,699
_1933
Position (kb)
2288
2289
2290 Strain fitness (log2 ratio)
-2
-1
0
1 at 2287.832 kb on + strand, within Pf6N2E2_1931 at 2287.833 kb on - strand, within Pf6N2E2_1931 at 2287.833 kb on - strand, within Pf6N2E2_1931 at 2287.849 kb on + strand, within Pf6N2E2_1931 at 2287.849 kb on + strand, within Pf6N2E2_1931 at 2287.850 kb on - strand, within Pf6N2E2_1931 at 2288.412 kb on - strand, within Pf6N2E2_1931 at 2288.961 kb on - strand, within Pf6N2E2_1932 at 2288.961 kb on - strand, within Pf6N2E2_1932 at 2289.014 kb on - strand, within Pf6N2E2_1932 at 2289.149 kb on + strand, within Pf6N2E2_1932 at 2289.149 kb on + strand, within Pf6N2E2_1932 at 2289.149 kb on + strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.150 kb on - strand, within Pf6N2E2_1932 at 2289.429 kb on - strand, within Pf6N2E2_1932 at 2289.609 kb on - strand at 2289.674 kb on - strand at 2289.674 kb on - strand at 2289.674 kb on - strand at 2289.676 kb on + strand at 2289.677 kb on - strand at 2289.677 kb on - strand at 2289.677 kb on - strand at 2289.677 kb on - strand at 2289.677 kb on - strand at 2289.823 kb on + strand at 2289.824 kb on - strand at 2289.824 kb on - strand at 2289.956 kb on - strand, within Pf6N2E2_1933 at 2289.980 kb on - strand, within Pf6N2E2_1933 at 2290.127 kb on + strand, within Pf6N2E2_1933 at 2290.128 kb on - strand, within Pf6N2E2_1933 at 2290.128 kb on - strand, within Pf6N2E2_1933 at 2290.130 kb on - strand, within Pf6N2E2_1933 at 2290.223 kb on + strand, within Pf6N2E2_1933 at 2290.336 kb on + strand, within Pf6N2E2_1933 at 2290.337 kb on - strand, within Pf6N2E2_1933 at 2290.553 kb on + strand, within Pf6N2E2_1933
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A remove 2,287,832 + Pf6N2E2_1931 0.53 -0.4 2,287,833 - Pf6N2E2_1931 0.53 +1.5 2,287,833 - Pf6N2E2_1931 0.53 +0.2 2,287,849 + Pf6N2E2_1931 0.54 +1.2 2,287,849 + Pf6N2E2_1931 0.54 -0.4 2,287,850 - Pf6N2E2_1931 0.54 -0.2 2,288,412 - Pf6N2E2_1931 0.84 +0.6 2,288,961 - Pf6N2E2_1932 0.19 +1.5 2,288,961 - Pf6N2E2_1932 0.19 +0.5 2,289,014 - Pf6N2E2_1932 0.26 -1.9 2,289,149 + Pf6N2E2_1932 0.44 +1.5 2,289,149 + Pf6N2E2_1932 0.44 +1.5 2,289,149 + Pf6N2E2_1932 0.44 +1.5 2,289,150 - Pf6N2E2_1932 0.44 -2.5 2,289,150 - Pf6N2E2_1932 0.44 -0.9 2,289,150 - Pf6N2E2_1932 0.44 -2.2 2,289,150 - Pf6N2E2_1932 0.44 -2.2 2,289,150 - Pf6N2E2_1932 0.44 -1.1 2,289,150 - Pf6N2E2_1932 0.44 +1.5 2,289,150 - Pf6N2E2_1932 0.44 -0.1 2,289,429 - Pf6N2E2_1932 0.82 -1.1 2,289,609 - +0.6 2,289,674 - +1.2 2,289,674 - -0.3 2,289,674 - -0.9 2,289,676 + +1.5 2,289,677 - +0.4 2,289,677 - -0.9 2,289,677 - +0.2 2,289,677 - +0.1 2,289,677 - +0.4 2,289,823 + +0.5 2,289,824 - +0.1 2,289,824 - -1.3 2,289,956 - Pf6N2E2_1933 0.20 -0.1 2,289,980 - Pf6N2E2_1933 0.23 +0.2 2,290,127 + Pf6N2E2_1933 0.39 -0.1 2,290,128 - Pf6N2E2_1933 0.39 -0.2 2,290,128 - Pf6N2E2_1933 0.39 -0.6 2,290,130 - Pf6N2E2_1933 0.39 -1.7 2,290,223 + Pf6N2E2_1933 0.49 -0.8 2,290,336 + Pf6N2E2_1933 0.61 +0.1 2,290,337 - Pf6N2E2_1933 0.61 +1.5 2,290,553 + Pf6N2E2_1933 0.84 -0.9
Or see this region's nucleotide sequence