Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1410

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
1,654,391	+		Pf6N2E2_1409	0.73	-1.0
1,654,391	+		Pf6N2E2_1409	0.73	+0.1
1,654,841	+		Pf6N2E2_1409	0.90	-0.3
1,654,841	+		Pf6N2E2_1409	0.90	-1.4
1,654,841	+		Pf6N2E2_1409	0.90	-0.0
1,654,841	+		Pf6N2E2_1409	0.90	-0.0
1,654,841	+		Pf6N2E2_1409	0.90	-0.8
1,654,841	+		Pf6N2E2_1409	0.90	-0.2
1,654,842	-		Pf6N2E2_1409	0.90	-1.6
1,654,842	-		Pf6N2E2_1409	0.90	+0.1
1,654,842	-		Pf6N2E2_1409	0.90	+0.7
1,654,842	-		Pf6N2E2_1409	0.90	-0.9
1,654,842	-		Pf6N2E2_1409	0.90	+1.1
1,654,842	-		Pf6N2E2_1409	0.90	-0.2
1,654,842	-		Pf6N2E2_1409	0.90	+0.3
1,654,900	-				+0.3
1,655,176	+				-0.2
1,655,176	+				+0.0
1,655,189	+				+0.9
1,655,439	-		Pf6N2E2_1410	0.13	+0.3
1,655,445	+		Pf6N2E2_1410	0.13	-1.2
1,655,445	+		Pf6N2E2_1410	0.13	-0.4
1,655,595	-		Pf6N2E2_1410	0.24	-0.5
1,655,597	+		Pf6N2E2_1410	0.24	+4.7
1,655,597	+		Pf6N2E2_1410	0.24	+0.7
1,655,597	+		Pf6N2E2_1410	0.24	-1.6
1,655,627	+		Pf6N2E2_1410	0.26	+0.7
1,655,627	+		Pf6N2E2_1410	0.26	-1.6
1,655,628	-		Pf6N2E2_1410	0.26	-0.3
1,655,628	-		Pf6N2E2_1410	0.26	+1.1
1,655,697	-		Pf6N2E2_1410	0.31	-0.4
1,655,783	+		Pf6N2E2_1410	0.37	+0.1
1,655,783	+		Pf6N2E2_1410	0.37	-0.4
1,655,783	+		Pf6N2E2_1410	0.37	+0.2
1,655,783	+		Pf6N2E2_1410	0.37	-0.3
1,655,784	-		Pf6N2E2_1410	0.38	-0.5
1,655,784	-		Pf6N2E2_1410	0.38	-1.6
1,655,784	-		Pf6N2E2_1410	0.38	-0.3
1,655,909	+		Pf6N2E2_1410	0.47	-1.7
1,655,909	+		Pf6N2E2_1410	0.47	-0.0
1,655,909	+		Pf6N2E2_1410	0.47	-0.1
1,655,916	-		Pf6N2E2_1410	0.47	-0.2
1,655,916	-		Pf6N2E2_1410	0.47	+0.3
1,656,000	-		Pf6N2E2_1410	0.53	+1.4
1,656,000	-		Pf6N2E2_1410	0.53	+1.4
1,656,000	-		Pf6N2E2_1410	0.53	+0.9
1,656,290	+		Pf6N2E2_1410	0.74	-1.0
1,656,291	-		Pf6N2E2_1410	0.74	-2.7
1,656,443	+		Pf6N2E2_1410	0.85	-0.8
1,656,476	+		Pf6N2E2_1410	0.87	+1.4
1,656,476	+		Pf6N2E2_1410	0.87	-1.0
1,656,476	+		Pf6N2E2_1410	0.87	+0.3
1,656,477	-		Pf6N2E2_1410	0.87	+1.1
1,656,477	-		Pf6N2E2_1410	0.87	-0.2
1,656,477	-		Pf6N2E2_1410	0.87	+1.4
1,656,477	-		Pf6N2E2_1410	0.87	+2.1
1,656,578	+				-0.8
1,656,608	+				+1.4
1,656,988	+		Pf6N2E2_1411	0.31	-1.8
1,656,989	-		Pf6N2E2_1411	0.31	+1.4
1,657,014	+		Pf6N2E2_1411	0.33	-2.0
1,657,014	+		Pf6N2E2_1411	0.33	-3.4
1,657,014	+		Pf6N2E2_1411	0.33	+1.4
1,657,015	-				+1.4
1,657,015	-		Pf6N2E2_1411	0.34	-0.4
1,657,015	-		Pf6N2E2_1411	0.34	-1.0
1,657,015	-		Pf6N2E2_1411	0.34	-2.6
1,657,019	-		Pf6N2E2_1411	0.34	-3.1
1,657,019	-		Pf6N2E2_1411	0.34	-1.0
1,657,019	-		Pf6N2E2_1411	0.34	-3.2
1,657,037	+		Pf6N2E2_1411	0.36	-1.4
1,657,086	-		Pf6N2E2_1411	0.40	+1.4
1,657,174	+		Pf6N2E2_1411	0.48	-3.2
1,657,175	-		Pf6N2E2_1411	0.48	-4.2
1,657,175	-		Pf6N2E2_1411	0.48	+1.4
1,657,175	-		Pf6N2E2_1411	0.48	-2.6
1,657,175	-		Pf6N2E2_1411	0.48	-1.8
1,657,175	-		Pf6N2E2_1411	0.48	-0.6
1,657,175	-		Pf6N2E2_1411	0.48	-0.1
1,657,175	-		Pf6N2E2_1411	0.48	-0.2
1,657,300	+		Pf6N2E2_1411	0.60	-2.2
1,657,301	-		Pf6N2E2_1411	0.60	-2.5
1,657,615	+		Pf6N2E2_1411	0.88	+1.4
1,657,616	-		Pf6N2E2_1411	0.88	-1.7
1,657,616	-		Pf6N2E2_1411	0.88	-2.8