Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1105

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
1,290,777	+		Pf6N2E2_1104	0.19	+0.4
1,290,777	+		Pf6N2E2_1104	0.19	-1.1
1,290,783	+		Pf6N2E2_1104	0.19	+0.4
1,290,783	+		Pf6N2E2_1104	0.19	+1.4
1,290,784	-		Pf6N2E2_1104	0.19	-0.1
1,290,807	-		Pf6N2E2_1104	0.21	+0.5
1,290,977	+		Pf6N2E2_1104	0.35	-0.1
1,291,083	+		Pf6N2E2_1104	0.44	+0.0
1,291,084	-		Pf6N2E2_1104	0.44	-1.6
1,291,410	+		Pf6N2E2_1104	0.72	-0.1
1,291,410	+		Pf6N2E2_1104	0.72	-0.1
1,291,410	+		Pf6N2E2_1104	0.72	+1.4
1,291,410	+		Pf6N2E2_1104	0.72	+0.1
1,291,425	+		Pf6N2E2_1104	0.73	+3.4
1,291,425	+		Pf6N2E2_1104	0.73	+0.5
1,291,425	+		Pf6N2E2_1104	0.73	+0.9
1,291,425	+		Pf6N2E2_1104	0.73	+1.4
1,291,426	-		Pf6N2E2_1104	0.73	+0.4
1,291,503	+		Pf6N2E2_1104	0.79	-0.5
1,291,629	+		Pf6N2E2_1104	0.90	-0.1
1,291,744	+				+1.4
1,291,744	+				+1.0
1,291,750	+				+0.7
1,291,750	+				-0.1
1,291,750	+				+0.6
1,291,751	-				+1.0
1,291,751	-				+0.0
1,291,751	-				+0.6
1,291,751	-				+1.4
1,291,751	-				-0.6
1,291,751	-				-0.4
1,291,751	-				-0.2
1,291,769	+				-0.1
1,291,770	-				+0.4
1,291,862	+				-0.6
1,291,863	-				-0.6
1,292,184	-		Pf6N2E2_1105	0.32	-0.4
1,292,283	-		Pf6N2E2_1105	0.40	-0.8
1,292,297	+		Pf6N2E2_1105	0.41	+0.2
1,292,322	-		Pf6N2E2_1105	0.43	-0.9
1,292,336	+		Pf6N2E2_1105	0.44	-0.1
1,292,336	+		Pf6N2E2_1105	0.44	-2.2
1,292,336	+		Pf6N2E2_1105	0.44	-0.2
1,292,336	+		Pf6N2E2_1105	0.44	-0.1
1,292,337	-		Pf6N2E2_1105	0.44	-0.9
1,292,480	+		Pf6N2E2_1105	0.55	+0.4
1,292,486	+		Pf6N2E2_1105	0.55	+0.5
1,292,631	-		Pf6N2E2_1105	0.67	+0.7
1,292,675	+		Pf6N2E2_1105	0.70	+0.3
1,292,675	+		Pf6N2E2_1105	0.70	-0.4
1,292,675	+		Pf6N2E2_1105	0.70	+0.0
1,292,675	+		Pf6N2E2_1105	0.70	+0.6
1,292,675	+		Pf6N2E2_1105	0.70	+1.4
1,292,675	+		Pf6N2E2_1105	0.70	+0.8
1,292,676	-		Pf6N2E2_1105	0.70	+0.1
1,292,676	-		Pf6N2E2_1105	0.70	+0.0
1,292,676	-		Pf6N2E2_1105	0.70	+0.6
1,292,684	+		Pf6N2E2_1105	0.71	+1.4
1,292,684	+		Pf6N2E2_1105	0.71	-0.8
1,292,685	-		Pf6N2E2_1105	0.71	-0.7
1,292,993	+				-0.4
1,292,993	+				+0.3
1,292,993	+				-0.2
1,292,993	+				+2.0
1,292,993	+				+1.4
1,292,993	+				+1.4
1,292,994	-				-0.2
1,292,994	-				+0.4
1,292,994	-				+0.4
1,293,001	+				+0.9
1,293,040	+				+0.9
1,293,078	-				-0.9
1,293,084	+				+0.0
1,293,084	+				+1.4
1,293,084	+				+0.1
1,293,085	-				-0.8
1,293,085	-				+0.3
1,293,094	+				+0.1
1,293,108	+				-0.6
1,293,203	+				+1.7
1,293,203	+				-0.4
1,293,203	+				-0.4
1,293,204	-				+0.3
1,293,437	+		Pf6N2E2_1106	0.25	-0.5
1,293,437	+		Pf6N2E2_1106	0.25	+0.4
1,293,496	+		Pf6N2E2_1106	0.31	+0.4
1,293,698	-		Pf6N2E2_1106	0.53	-1.0
1,293,913	+		Pf6N2E2_1106	0.76	-0.6
1,293,914	-		Pf6N2E2_1106	0.76	-0.4
1,293,914	-		Pf6N2E2_1106	0.76	+1.8
1,294,028	+		Pf6N2E2_1106	0.88	-0.0
1,294,028	+		Pf6N2E2_1106	0.88	+2.0
1,294,029	-		Pf6N2E2_1106	0.89	-0.7
1,294,029	-		Pf6N2E2_1106	0.89	-0.6