Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1014

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
1,183,245	+		Pf6N2E2_1013	0.38	-0.8
1,183,245	+		Pf6N2E2_1013	0.38	-0.6
1,183,297	-		Pf6N2E2_1013	0.45	-1.0
1,183,439	+		Pf6N2E2_1013	0.62	+0.3
1,183,625	+		Pf6N2E2_1013	0.84	+0.2
1,183,625	+		Pf6N2E2_1013	0.84	+1.5
1,183,625	+		Pf6N2E2_1013	0.84	-2.7
1,183,626	-		Pf6N2E2_1013	0.84	+0.3
1,183,634	+		Pf6N2E2_1013	0.85	+0.2
1,183,635	-		Pf6N2E2_1013	0.86	-0.0
1,183,752	-				-0.4
1,183,756	-				+1.3
1,183,756	-				+0.1
1,183,756	-				+0.5
1,183,796	+				-0.5
1,183,833	+				+0.9
1,183,837	+				-0.1
1,183,838	-				-0.8
1,183,868	+				-0.4
1,183,908	-				+0.4
1,183,996	+				+1.5
1,183,996	+				-0.0
1,183,997	-				-1.1
1,184,195	+				-0.8
1,184,254	-		Pf6N2E2_1014	0.33	+1.5
1,184,254	-		Pf6N2E2_1014	0.33	-0.3
1,184,280	-		Pf6N2E2_1014	0.47	+0.7
1,184,600	-				+1.7
1,184,600	-				+1.5
1,184,611	+				-0.2
1,184,622	+				+0.6
1,184,700	-				-0.4
1,184,709	+				+0.7
1,184,799	+				+0.1
1,184,799	+				+0.3
1,184,799	+				-0.5
1,184,800	-				+1.5
1,184,801	+				+0.4
1,184,801	+				-0.8
1,184,801	+				-0.2
1,184,801	+				-0.8
1,184,802	-				+1.5
1,184,816	-				+0.5
1,184,845	-				-0.3
1,184,845	-				-0.7
1,184,847	+				-2.4
1,184,847	+				-0.6
1,184,847	+				+0.3
1,184,847	+				+0.5
1,184,847	+				-0.2
1,184,848	-				+0.5
1,184,848	-				-1.3
1,184,848	-				-0.3
1,184,866	-				-1.1
1,184,956	+				-0.5
1,184,957	-				-1.0
1,184,980	+				-0.6
1,185,260	+		Pf6N2E2_1015	0.35	-0.7
1,185,260	+		Pf6N2E2_1015	0.35	-0.1
1,185,261	-		Pf6N2E2_1015	0.35	+1.7
1,185,343	-		Pf6N2E2_1015	0.44	+0.1