Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4300 and BT4301 are separated by 135 nucleotides BT4301 and BT4302 are separated by 7 nucleotides BT4302 and BT4303 are separated by 215 nucleotides
BT4300: BT4300 - transcription regulator, CRP family (NCBI ptt file), at 5,668,103 to 5,668,765
BT4300
BT4301: BT4301 - conserved hypothetical protein, putative membrane protein (NCBI ptt file), at 5,668,901 to 5,669,500
BT4301
BT4302: BT4302 - conserved hypothetical protein (NCBI ptt file), at 5,669,508 to 5,670,173
BT4302
BT4303: BT4303 - glycogen debranching enzyme-related protein (4-alpha-glucanotransferase) (NCBI ptt file), at 5,670,389 to 5,672,326
BT4303
Position (kb) 5669
5670
5671 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5668.517 kb on + strand, within BT4300 at 5668.638 kb on - strand, within BT4300 at 5668.733 kb on + strand at 5668.781 kb on - strand at 5668.781 kb on - strand at 5668.825 kb on + strand at 5668.825 kb on + strand at 5668.901 kb on - strand at 5668.990 kb on + strand, within BT4301 at 5669.517 kb on - strand at 5669.517 kb on - strand at 5669.546 kb on + strand at 5669.547 kb on - strand at 5669.702 kb on - strand, within BT4302 at 5669.731 kb on + strand, within BT4302 at 5669.731 kb on + strand, within BT4302 at 5669.773 kb on + strand, within BT4302 at 5669.773 kb on + strand, within BT4302 at 5669.819 kb on - strand, within BT4302 at 5669.933 kb on - strand, within BT4302 at 5669.969 kb on + strand, within BT4302 at 5670.000 kb on + strand, within BT4302 at 5670.153 kb on - strand at 5670.205 kb on - strand at 5670.288 kb on - strand at 5670.294 kb on - strand at 5670.317 kb on - strand at 5670.317 kb on - strand at 5670.317 kb on - strand at 5670.321 kb on - strand at 5670.321 kb on - strand at 5670.342 kb on - strand at 5670.342 kb on - strand at 5670.344 kb on - strand at 5670.344 kb on - strand at 5670.344 kb on - strand at 5670.373 kb on + strand at 5670.377 kb on + strand at 5670.389 kb on - strand at 5670.479 kb on + strand at 5670.487 kb on + strand at 5670.505 kb on + strand at 5670.506 kb on - strand at 5670.634 kb on + strand, within BT4303 at 5670.634 kb on + strand, within BT4303 at 5670.634 kb on + strand, within BT4303 at 5670.639 kb on - strand, within BT4303 at 5670.670 kb on + strand, within BT4303 at 5670.670 kb on + strand, within BT4303 at 5670.670 kb on + strand, within BT4303 at 5670.670 kb on + strand, within BT4303 at 5670.674 kb on + strand, within BT4303 at 5670.675 kb on - strand, within BT4303 at 5670.717 kb on - strand, within BT4303 at 5670.717 kb on - strand, within BT4303 at 5670.739 kb on - strand, within BT4303 at 5670.863 kb on + strand, within BT4303 at 5670.864 kb on - strand, within BT4303 at 5670.864 kb on - strand, within BT4303 at 5670.928 kb on + strand, within BT4303 at 5670.928 kb on + strand, within BT4303 at 5670.928 kb on + strand, within BT4303 at 5670.928 kb on + strand, within BT4303 at 5670.928 kb on + strand, within BT4303 at 5670.929 kb on - strand, within BT4303 at 5670.929 kb on - strand, within BT4303 at 5670.932 kb on + strand, within BT4303 at 5670.933 kb on - strand, within BT4303 at 5671.061 kb on + strand, within BT4303 at 5671.062 kb on - strand, within BT4303 at 5671.089 kb on + strand, within BT4303 at 5671.090 kb on - strand, within BT4303
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 5,668,517 + BT4300 0.62 -1.6 5,668,638 - BT4300 0.81 +0.7 5,668,733 + -1.4 5,668,781 - -0.3 5,668,781 - -1.2 5,668,825 + +0.1 5,668,825 + -1.5 5,668,901 - -0.3 5,668,990 + BT4301 0.15 +0.7 5,669,517 - -2.1 5,669,517 - -1.0 5,669,546 + -1.5 5,669,547 - -0.8 5,669,702 - BT4302 0.29 -1.3 5,669,731 + BT4302 0.33 -2.0 5,669,731 + BT4302 0.33 -0.8 5,669,773 + BT4302 0.40 -0.6 5,669,773 + BT4302 0.40 -1.6 5,669,819 - BT4302 0.47 -0.5 5,669,933 - BT4302 0.64 -0.9 5,669,969 + BT4302 0.69 +0.1 5,670,000 + BT4302 0.74 -3.0 5,670,153 - +1.0 5,670,205 - +0.2 5,670,288 - -2.6 5,670,294 - -0.3 5,670,317 - -2.1 5,670,317 - -1.0 5,670,317 - +0.7 5,670,321 - -1.8 5,670,321 - -0.0 5,670,342 - +1.3 5,670,342 - -0.1 5,670,344 - -1.5 5,670,344 - +0.4 5,670,344 - +0.3 5,670,373 + +0.9 5,670,377 + +0.3 5,670,389 - -0.6 5,670,479 + +0.9 5,670,487 + -1.9 5,670,505 + -0.7 5,670,506 - +0.2 5,670,634 + BT4303 0.13 -0.1 5,670,634 + BT4303 0.13 -1.6 5,670,634 + BT4303 0.13 -1.1 5,670,639 - BT4303 0.13 -2.8 5,670,670 + BT4303 0.14 +0.2 5,670,670 + BT4303 0.14 -2.1 5,670,670 + BT4303 0.14 +0.1 5,670,670 + BT4303 0.14 -1.2 5,670,674 + BT4303 0.15 -0.3 5,670,675 - BT4303 0.15 -2.4 5,670,717 - BT4303 0.17 -1.4 5,670,717 - BT4303 0.17 -0.6 5,670,739 - BT4303 0.18 +1.1 5,670,863 + BT4303 0.24 -2.0 5,670,864 - BT4303 0.25 -0.0 5,670,864 - BT4303 0.25 -2.4 5,670,928 + BT4303 0.28 +0.1 5,670,928 + BT4303 0.28 +0.7 5,670,928 + BT4303 0.28 -2.3 5,670,928 + BT4303 0.28 -2.2 5,670,928 + BT4303 0.28 -0.0 5,670,929 - BT4303 0.28 -0.6 5,670,929 - BT4303 0.28 -1.5 5,670,932 + BT4303 0.28 +1.2 5,670,933 - BT4303 0.28 +0.4 5,671,061 + BT4303 0.35 -1.1 5,671,062 - BT4303 0.35 -0.2 5,671,089 + BT4303 0.36 -0.1 5,671,090 - BT4303 0.36 -0.6
Or see this region's nucleotide sequence