Experiment: Lactulose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0676 and BT0677 are separated by 121 nucleotides BT0677 and BT0678 are separated by 233 nucleotides
BT0676: BT0676 - N-acetylglucosamine-6-phosphate deacetylase (NCBI ptt file), at 837,499 to 838,671
BT0676
BT0677: BT0677 - thioredoxin (TRX) (NCBI ptt file), at 838,793 to 839,152
BT0677
BT0678: BT0678 - cation efflux system protein czcC (NCBI ptt file), at 839,386 to 840,648
BT0678
Position (kb) 838
839
840 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 837.809 kb on + strand, within BT0676 at 837.809 kb on + strand, within BT0676 at 837.812 kb on - strand, within BT0676 at 837.955 kb on + strand, within BT0676 at 838.209 kb on - strand, within BT0676 at 838.210 kb on + strand, within BT0676 at 838.232 kb on + strand, within BT0676 at 838.267 kb on - strand, within BT0676 at 838.301 kb on + strand, within BT0676 at 838.308 kb on + strand, within BT0676 at 838.336 kb on + strand, within BT0676 at 838.378 kb on - strand, within BT0676 at 838.399 kb on - strand, within BT0676 at 838.503 kb on + strand, within BT0676 at 838.582 kb on - strand at 838.589 kb on + strand at 838.956 kb on + strand, within BT0677 at 838.976 kb on - strand, within BT0677 at 838.976 kb on - strand, within BT0677 at 839.001 kb on - strand, within BT0677 at 839.001 kb on - strand, within BT0677 at 839.009 kb on + strand, within BT0677 at 839.524 kb on + strand, within BT0678 at 839.555 kb on + strand, within BT0678 at 839.556 kb on - strand, within BT0678 at 839.600 kb on - strand, within BT0678 at 839.627 kb on - strand, within BT0678
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose 20mM (C) remove 837,809 + BT0676 0.26 -1.1 837,809 + BT0676 0.26 -0.7 837,812 - BT0676 0.27 +0.0 837,955 + BT0676 0.39 +0.5 838,209 - BT0676 0.61 -1.8 838,210 + BT0676 0.61 +1.7 838,232 + BT0676 0.62 -0.4 838,267 - BT0676 0.65 -1.1 838,301 + BT0676 0.68 -0.2 838,308 + BT0676 0.69 -0.1 838,336 + BT0676 0.71 -1.9 838,378 - BT0676 0.75 -1.3 838,399 - BT0676 0.77 -1.6 838,503 + BT0676 0.86 -1.3 838,582 - -3.8 838,589 + -1.1 838,956 + BT0677 0.45 -0.4 838,976 - BT0677 0.51 -1.7 838,976 - BT0677 0.51 -0.7 839,001 - BT0677 0.58 -2.6 839,001 - BT0677 0.58 -0.7 839,009 + BT0677 0.60 -1.3 839,524 + BT0678 0.11 -1.1 839,555 + BT0678 0.13 -1.3 839,556 - BT0678 0.13 +1.3 839,600 - BT0678 0.17 +0.2 839,627 - BT0678 0.19 -0.0
Or see this region's nucleotide sequence