Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4298

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
5,011,838	+		Pf6N2E2_4297	0.49	-2.4
5,011,838	+		Pf6N2E2_4297	0.49	-0.1
5,011,839	-		Pf6N2E2_4297	0.49	-1.0
5,011,839	-		Pf6N2E2_4297	0.49	-0.8
5,011,932	+		Pf6N2E2_4297	0.55	+0.1
5,011,933	-		Pf6N2E2_4297	0.55	+1.2
5,011,933	-		Pf6N2E2_4297	0.55	+0.2
5,011,960	-		Pf6N2E2_4297	0.57	+0.0
5,012,044	+		Pf6N2E2_4297	0.62	+1.1
5,012,044	+		Pf6N2E2_4297	0.62	-1.8
5,012,044	+		Pf6N2E2_4297	0.62	-1.2
5,012,044	+		Pf6N2E2_4297	0.62	-1.3
5,012,044	+		Pf6N2E2_4297	0.62	-0.5
5,012,044	+		Pf6N2E2_4297	0.62	+1.4
5,012,044	+		Pf6N2E2_4297	0.62	+1.4
5,012,044	+		Pf6N2E2_4297	0.62	+0.1
5,012,045	-		Pf6N2E2_4297	0.63	+0.4
5,012,045	-		Pf6N2E2_4297	0.63	-0.8
5,012,045	-		Pf6N2E2_4297	0.63	-2.0
5,012,045	-		Pf6N2E2_4297	0.63	-0.1
5,012,045	-		Pf6N2E2_4297	0.63	-0.3
5,012,045	-		Pf6N2E2_4297	0.63	-0.2
5,012,045	-		Pf6N2E2_4297	0.63	+1.4
5,012,045	-		Pf6N2E2_4297	0.63	-0.2
5,012,045	-		Pf6N2E2_4297	0.63	+0.4
5,012,045	-		Pf6N2E2_4297	0.63	+0.2
5,012,099	-		Pf6N2E2_4297	0.66	-0.6
5,012,099	-		Pf6N2E2_4297	0.66	+2.4
5,012,148	-		Pf6N2E2_4297	0.69	-1.0
5,012,418	+		Pf6N2E2_4297	0.87	-0.2
5,012,419	-		Pf6N2E2_4297	0.87	-0.2
5,012,419	-		Pf6N2E2_4297	0.87	-0.2
5,012,480	+				-2.4
5,012,480	+				-0.7
5,012,539	+				-1.5
5,012,540	-				-0.2
5,012,540	-				-0.3
5,012,540	-				+0.0
5,012,540	-				+0.4
5,012,560	+				-2.1
5,012,560	+				-1.9
5,012,583	+				-2.0
5,012,584	-				-0.1
5,012,625	+				-0.2
5,012,626	-				-0.9
5,012,777	+		Pf6N2E2_4298	0.23	-1.2
5,012,777	+		Pf6N2E2_4298	0.23	-1.7
5,012,777	+		Pf6N2E2_4298	0.23	-1.2
5,012,778	-		Pf6N2E2_4298	0.23	+2.4
5,012,935	-		Pf6N2E2_4298	0.55	-0.6
5,012,935	-		Pf6N2E2_4298	0.55	-0.2
5,013,166	-				+1.4
5,013,194	+				-0.4
5,013,194	+				-0.0
5,013,194	+				+0.1
5,013,195	-				-0.3
5,013,195	-				-1.1
5,013,195	-				-0.4
5,013,205	+				-1.0
5,013,235	-				+1.9
5,013,291	+				+1.4
5,013,526	+		Pf6N2E2_4299	0.23	-0.8
5,013,526	+		Pf6N2E2_4299	0.23	-0.6
5,013,526	+		Pf6N2E2_4299	0.23	-0.3
5,013,527	-		Pf6N2E2_4299	0.23	-0.4
5,013,527	-		Pf6N2E2_4299	0.23	-1.4
5,013,527	-		Pf6N2E2_4299	0.23	+1.4
5,013,527	-		Pf6N2E2_4299	0.23	-0.4
5,013,603	+		Pf6N2E2_4299	0.28	+0.1
5,013,603	+		Pf6N2E2_4299	0.28	-0.6
5,013,603	+		Pf6N2E2_4299	0.28	+0.3
5,013,603	+		Pf6N2E2_4299	0.28	-0.4
5,013,603	+		Pf6N2E2_4299	0.28	-1.2
5,013,604	-		Pf6N2E2_4299	0.28	-0.0
5,013,604	-		Pf6N2E2_4299	0.28	+0.4
5,013,604	-		Pf6N2E2_4299	0.28	+0.1
5,013,604	-		Pf6N2E2_4299	0.28	-1.1
5,013,604	-		Pf6N2E2_4299	0.28	+0.5
5,013,611	+		Pf6N2E2_4299	0.29	-0.7
5,013,611	+		Pf6N2E2_4299	0.29	-1.4
5,013,611	+		Pf6N2E2_4299	0.29	+0.2
5,013,611	+		Pf6N2E2_4299	0.29	-0.4
5,013,611	+		Pf6N2E2_4299	0.29	-0.2
5,013,611	+		Pf6N2E2_4299	0.29	-0.3
5,013,611	+		Pf6N2E2_4299	0.29	-1.4
5,013,611	+		Pf6N2E2_4299	0.29	+0.1
5,013,611	+		Pf6N2E2_4299	0.29	-0.1
5,013,612	-		Pf6N2E2_4299	0.29	+0.6
5,013,612	-		Pf6N2E2_4299	0.29	-0.2
5,013,615	+		Pf6N2E2_4299	0.29	-1.2
5,013,615	+		Pf6N2E2_4299	0.29	-0.4
5,013,615	+		Pf6N2E2_4299	0.29	-1.9
5,013,615	+		Pf6N2E2_4299	0.29	-0.3
5,013,615	+		Pf6N2E2_4299	0.29	-0.1
5,013,615	+		Pf6N2E2_4299	0.29	-1.4
5,013,616	-		Pf6N2E2_4299	0.29	-0.4
5,013,616	-		Pf6N2E2_4299	0.29	-0.1
5,013,616	-		Pf6N2E2_4299	0.29	-3.1
5,013,616	-		Pf6N2E2_4299	0.29	+0.9
5,013,616	-		Pf6N2E2_4299	0.29	-0.8
5,013,616	-		Pf6N2E2_4299	0.29	-0.7
5,013,616	-		Pf6N2E2_4299	0.29	-1.3
5,013,616	-		Pf6N2E2_4299	0.29	-0.2
5,013,627	+		Pf6N2E2_4299	0.30	-0.7
5,013,627	+		Pf6N2E2_4299	0.30	-1.2
5,013,628	-		Pf6N2E2_4299	0.30	+0.3
5,013,628	-		Pf6N2E2_4299	0.30	-0.6
5,013,672	+		Pf6N2E2_4299	0.33	+0.5
5,013,672	+		Pf6N2E2_4299	0.33	-0.4
5,013,673	-		Pf6N2E2_4299	0.33	+0.5
5,013,673	-		Pf6N2E2_4299	0.33	+0.4
5,013,673	-		Pf6N2E2_4299	0.33	+0.0
5,013,673	-		Pf6N2E2_4299	0.33	+3.4
5,013,673	-		Pf6N2E2_4299	0.33	+1.4
5,013,673	-		Pf6N2E2_4299	0.33	+0.4
5,013,673	-		Pf6N2E2_4299	0.33	-0.8
5,013,673	-		Pf6N2E2_4299	0.33	+0.4
5,013,714	+		Pf6N2E2_4299	0.36	+1.0
5,013,715	-		Pf6N2E2_4299	0.36	+0.9
5,013,715	-		Pf6N2E2_4299	0.36	-0.0
5,013,715	-		Pf6N2E2_4299	0.36	+0.4
5,013,715	-		Pf6N2E2_4299	0.36	-0.2
5,013,715	-		Pf6N2E2_4299	0.36	+0.2
5,013,795	-		Pf6N2E2_4299	0.41	+1.2
5,013,888	+		Pf6N2E2_4299	0.47	+1.2
5,013,888	+		Pf6N2E2_4299	0.47	-0.6
5,013,966	+		Pf6N2E2_4299	0.53	+0.1
5,013,986	+		Pf6N2E2_4299	0.54	+1.8
5,013,999	+		Pf6N2E2_4299	0.55	-0.6
5,014,000	-		Pf6N2E2_4299	0.55	+0.6
5,014,000	-		Pf6N2E2_4299	0.55	+0.3
5,014,000	-		Pf6N2E2_4299	0.55	+0.9
5,014,020	+		Pf6N2E2_4299	0.56	-0.2
5,014,020	+		Pf6N2E2_4299	0.56	-0.4
5,014,020	+		Pf6N2E2_4299	0.56	+0.2
5,014,021	-		Pf6N2E2_4299	0.56	-0.6