Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3832

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
4,464,299	+		Pf6N2E2_3829	0.85	-1.2
4,464,299	+		Pf6N2E2_3829	0.85	+1.4
4,464,299	+		Pf6N2E2_3829	0.85	+0.9
4,464,299	+		Pf6N2E2_3829	0.85	-0.5
4,464,299	+		Pf6N2E2_3829	0.85	+0.7
4,464,300	-		Pf6N2E2_3829	0.86	+0.1
4,464,300	-		Pf6N2E2_3829	0.86	+0.4
4,464,300	-		Pf6N2E2_3829	0.86	+0.1
4,464,300	-		Pf6N2E2_3829	0.86	+1.4
4,464,300	-		Pf6N2E2_3829	0.86	-0.2
4,464,383	+				+1.2
4,464,384	-				-0.2
4,464,384	-				-0.1
4,464,384	-				+0.1
4,464,384	-				+1.3
4,464,384	-				+0.5
4,464,435	+		Pf6N2E2_3830	0.10	-0.1
4,464,605	+		Pf6N2E2_3830	0.77	+1.7
4,464,605	+		Pf6N2E2_3830	0.77	-0.2
4,464,605	+		Pf6N2E2_3830	0.77	+0.5
4,464,605	+		Pf6N2E2_3830	0.77	+1.1
4,464,606	-		Pf6N2E2_3830	0.77	-1.2
4,464,606	-		Pf6N2E2_3830	0.77	+1.2
4,464,606	-		Pf6N2E2_3830	0.77	+0.8
4,464,623	+		Pf6N2E2_3830	0.84	+0.8
4,464,632	+		Pf6N2E2_3830	0.87	+0.3
4,464,704	-				+0.2
4,464,704	-				+1.0
4,465,042	-				+0.9
4,465,100	-				-0.4
4,465,115	-				-0.2
4,465,115	-				+0.0
4,465,116	+				+0.6
4,465,116	+				+0.3
4,465,116	+				-1.6
4,465,116	+				+0.2
4,465,116	+				+1.8
4,465,116	+				-0.5
4,465,117	-				+0.3
4,465,117	-				+0.6
4,465,117	-				+0.0
4,465,117	-				+0.1
4,465,117	-				+2.0
4,465,117	-				+0.6
4,465,170	+				-0.3
4,465,170	+				-0.3
4,465,176	+				-0.1
4,465,177	-				-1.6
4,465,236	+				+1.3
4,466,769	+				+0.5
4,466,770	-				-0.1
4,466,770	-				-0.3
4,466,770	-				+0.1
4,466,770	-				+0.4
4,466,880	+				+0.6
4,467,042	+		Pf6N2E2_3833	0.56	+0.6
4,467,042	+		Pf6N2E2_3833	0.56	+0.3
4,467,043	-		Pf6N2E2_3833	0.56	+2.3
4,467,043	-		Pf6N2E2_3833	0.56	+1.3
4,467,045	+		Pf6N2E2_3833	0.58	+0.3
4,467,045	+		Pf6N2E2_3833	0.58	-0.5
4,467,046	-		Pf6N2E2_3833	0.58	+1.3
4,467,046	-		Pf6N2E2_3833	0.58	+1.3
4,467,046	-		Pf6N2E2_3833	0.58	-2.5
4,467,046	-		Pf6N2E2_3833	0.58	+0.7
4,467,046	-		Pf6N2E2_3833	0.58	+1.3
4,467,078	+		Pf6N2E2_3833	0.75	-1.2
4,467,079	-				+0.1
4,467,079	-				+2.1
4,467,440	-		Pf6N2E2_3834	0.28	-0.3
4,467,440	-		Pf6N2E2_3834	0.28	+2.2
4,467,496	+		Pf6N2E2_3834	0.32	+0.8
4,467,497	-		Pf6N2E2_3834	0.32	+1.3
4,467,497	-		Pf6N2E2_3834	0.32	+1.3
4,467,499	+		Pf6N2E2_3834	0.32	-0.7
4,467,499	+		Pf6N2E2_3834	0.32	+0.3
4,467,500	-		Pf6N2E2_3834	0.33	+1.5
4,467,500	-		Pf6N2E2_3834	0.33	+0.3