Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3580

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
4,170,099	+		Pf6N2E2_3579	0.25	+0.2
4,170,099	+		Pf6N2E2_3579	0.25	+1.0
4,170,099	+		Pf6N2E2_3579	0.25	+1.0
4,170,099	+		Pf6N2E2_3579	0.25	+0.1
4,170,099	+		Pf6N2E2_3579	0.25	+1.2
4,170,099	+		Pf6N2E2_3579	0.25	+1.3
4,170,100	-		Pf6N2E2_3579	0.25	+0.6
4,170,100	-		Pf6N2E2_3579	0.25	+0.2
4,170,117	+		Pf6N2E2_3579	0.27	+0.6
4,170,117	+		Pf6N2E2_3579	0.27	+0.4
4,170,118	-		Pf6N2E2_3579	0.27	+0.7
4,170,118	-		Pf6N2E2_3579	0.27	+1.0
4,170,177	+		Pf6N2E2_3579	0.34	+0.2
4,170,178	-		Pf6N2E2_3579	0.34	+0.8
4,170,267	+		Pf6N2E2_3579	0.43	+1.4
4,170,267	+		Pf6N2E2_3579	0.43	-0.0
4,170,267	+		Pf6N2E2_3579	0.43	+1.1
4,170,268	-		Pf6N2E2_3579	0.43	+0.4
4,170,268	-		Pf6N2E2_3579	0.43	+0.3
4,170,279	+		Pf6N2E2_3579	0.45	+1.2
4,170,279	+		Pf6N2E2_3579	0.45	+0.7
4,170,279	+		Pf6N2E2_3579	0.45	+1.3
4,170,280	-		Pf6N2E2_3579	0.45	+1.3
4,170,280	-		Pf6N2E2_3579	0.45	+1.3
4,170,280	-		Pf6N2E2_3579	0.45	+0.5
4,170,280	-		Pf6N2E2_3579	0.45	+1.2
4,170,280	-		Pf6N2E2_3579	0.45	+1.4
4,170,280	-		Pf6N2E2_3579	0.45	+0.7
4,170,280	-		Pf6N2E2_3579	0.45	+0.6
4,170,280	-		Pf6N2E2_3579	0.45	+1.2
4,170,280	-		Pf6N2E2_3579	0.45	+1.8
4,170,280	-		Pf6N2E2_3579	0.45	+0.5
4,170,333	+		Pf6N2E2_3579	0.51	+0.5
4,170,333	+		Pf6N2E2_3579	0.51	+0.6
4,170,333	+		Pf6N2E2_3579	0.51	+0.9
4,170,334	-		Pf6N2E2_3579	0.51	+0.3
4,170,334	-		Pf6N2E2_3579	0.51	+1.3
4,170,454	+		Pf6N2E2_3579	0.64	+2.1
4,170,454	+		Pf6N2E2_3579	0.64	+0.6
4,170,505	+		Pf6N2E2_3579	0.69	+1.0
4,170,505	+		Pf6N2E2_3579	0.69	+1.7
4,170,505	+		Pf6N2E2_3579	0.69	+0.7
4,170,505	+		Pf6N2E2_3579	0.69	+0.8
4,170,505	+		Pf6N2E2_3579	0.69	+0.5
4,170,506	-		Pf6N2E2_3579	0.70	-0.1
4,170,507	+		Pf6N2E2_3579	0.70	+1.8
4,170,507	+		Pf6N2E2_3579	0.70	+0.7
4,170,508	-		Pf6N2E2_3579	0.70	+1.3
4,170,508	-		Pf6N2E2_3579	0.70	+1.3
4,170,508	-		Pf6N2E2_3579	0.70	+1.3
4,170,534	+		Pf6N2E2_3579	0.73	+1.5
4,170,534	+		Pf6N2E2_3579	0.73	+0.0
4,170,535	-		Pf6N2E2_3579	0.73	+1.2
4,170,606	+		Pf6N2E2_3579	0.80	+1.0
4,170,606	+		Pf6N2E2_3579	0.80	+1.9
4,170,607	-		Pf6N2E2_3579	0.81	-1.3
4,170,607	-		Pf6N2E2_3579	0.81	+1.1
4,170,607	-		Pf6N2E2_3579	0.81	+0.8
4,170,639	+		Pf6N2E2_3579	0.84	+1.5
4,170,654	+		Pf6N2E2_3579	0.86	+0.9
4,170,654	+		Pf6N2E2_3579	0.86	+0.3
4,170,654	+		Pf6N2E2_3579	0.86	+0.9
4,170,654	+		Pf6N2E2_3579	0.86	+0.5
4,170,654	+		Pf6N2E2_3579	0.86	+1.9
4,170,655	-		Pf6N2E2_3579	0.86	+0.5
4,170,655	-		Pf6N2E2_3579	0.86	+1.2
4,170,655	-		Pf6N2E2_3579	0.86	+1.3
4,170,655	-		Pf6N2E2_3579	0.86	+0.0
4,170,655	-		Pf6N2E2_3579	0.86	+2.3
4,170,696	+				+0.3
4,170,729	+				+0.3
4,170,729	+				+0.8
4,170,730	-				+1.9
4,170,730	-				+0.9
4,170,775	+				+0.5
4,170,775	+				+1.3
4,170,776	-				-0.2
4,170,776	-				+1.8
4,170,776	-				+0.8
4,170,776	-				+1.1
4,170,785	-				+1.2
4,170,846	+				-0.1
4,170,847	-				-0.4
4,170,847	-				-0.5
4,170,853	+				-0.0
4,170,950	+				+1.2
4,170,951	-				-0.4
4,170,951	-				+0.8
4,170,974	+				+0.6
4,170,974	+				+1.6
4,170,975	-				+0.5
4,170,975	-				+2.2
4,170,975	-				+1.3
4,170,998	+				+1.4
4,170,998	+				+1.3
4,170,999	-				-0.4
4,171,007	+				+1.4
4,171,007	+				+2.6
4,171,007	+				+1.3
4,171,008	-				+1.4
4,171,008	-				+1.2
4,171,107	+		Pf6N2E2_3580	0.14	+0.6
4,171,108	-		Pf6N2E2_3580	0.14	+2.0
4,171,157	+		Pf6N2E2_3580	0.18	+1.2
4,171,157	+		Pf6N2E2_3580	0.18	+0.8
4,171,158	-		Pf6N2E2_3580	0.18	+0.4
4,171,164	-		Pf6N2E2_3580	0.19	+0.6
4,171,173	-		Pf6N2E2_3580	0.20	+1.1
4,171,262	+		Pf6N2E2_3580	0.28	-0.2
4,171,262	+		Pf6N2E2_3580	0.28	+0.6
4,171,262	+		Pf6N2E2_3580	0.28	+0.9
4,171,262	+		Pf6N2E2_3580	0.28	+0.5
4,171,262	+		Pf6N2E2_3580	0.28	+0.7
4,171,262	+		Pf6N2E2_3580	0.28	+2.4
4,171,262	+		Pf6N2E2_3580	0.28	+1.8
4,171,262	+		Pf6N2E2_3580	0.28	+1.1
4,171,263	-		Pf6N2E2_3580	0.28	+1.3
4,171,263	-		Pf6N2E2_3580	0.28	+2.9
4,171,263	-		Pf6N2E2_3580	0.28	+0.5
4,171,263	-		Pf6N2E2_3580	0.28	+1.3
4,171,277	+		Pf6N2E2_3580	0.29	+1.3
4,171,277	+		Pf6N2E2_3580	0.29	+1.9
4,171,277	+		Pf6N2E2_3580	0.29	+1.3
4,171,490	+		Pf6N2E2_3580	0.48	+1.3
4,171,491	-		Pf6N2E2_3580	0.48	+1.2
4,171,556	+		Pf6N2E2_3580	0.53	+1.3
4,171,556	+		Pf6N2E2_3580	0.53	+0.5
4,171,557	-		Pf6N2E2_3580	0.53	+1.3
4,171,557	-		Pf6N2E2_3580	0.53	-2.6
4,171,557	-		Pf6N2E2_3580	0.53	+0.7
4,171,557	-		Pf6N2E2_3580	0.53	+0.6
4,171,613	+		Pf6N2E2_3580	0.58	+1.4
4,171,613	+		Pf6N2E2_3580	0.58	+1.8
4,171,613	+		Pf6N2E2_3580	0.58	+1.2
4,171,613	+		Pf6N2E2_3580	0.58	+1.1
4,171,613	+		Pf6N2E2_3580	0.58	+2.3
4,171,614	-		Pf6N2E2_3580	0.58	+1.2
4,171,614	-		Pf6N2E2_3580	0.58	+1.7
4,171,740	-		Pf6N2E2_3580	0.70	+1.2
4,171,943	+		Pf6N2E2_3580	0.87	+1.3
4,171,943	+		Pf6N2E2_3580	0.87	+0.2
4,171,943	+		Pf6N2E2_3580	0.87	+1.7
4,171,943	+		Pf6N2E2_3580	0.87	+0.5
4,171,943	+		Pf6N2E2_3580	0.87	+1.5
4,171,943	+		Pf6N2E2_3580	0.87	+1.3
4,171,943	+		Pf6N2E2_3580	0.87	+2.1
4,171,943	+		Pf6N2E2_3580	0.87	+0.9
4,171,943	+		Pf6N2E2_3580	0.87	+0.2
4,171,944	-		Pf6N2E2_3580	0.88	+0.1
4,171,944	-		Pf6N2E2_3580	0.88	+1.3
4,171,944	-		Pf6N2E2_3580	0.88	+0.3
4,171,944	-		Pf6N2E2_3580	0.88	+0.0
4,171,944	-		Pf6N2E2_3580	0.88	+0.6
4,171,944	-		Pf6N2E2_3580	0.88	+0.3
4,172,070	-				+2.1
4,172,070	-				+1.3
4,172,070	-				+1.0
4,172,110	+				+0.8
4,172,174	-				-2.4
4,172,197	-				-0.4
4,172,197	-				+0.0
4,172,197	-				+0.9
4,172,197	-				-0.5
4,172,203	-				+0.1
4,172,203	-				-2.1
4,172,271	+				+1.6
4,172,272	-				-0.7
4,172,275	+				+1.3
4,172,275	+				+1.8
4,172,275	+				+1.7
4,172,276	-				-0.7
4,172,342	+				+0.5
4,172,342	+				+1.3
4,172,343	-				-0.3
4,172,343	-				-1.1
4,172,387	+				+1.7
4,172,387	+				+0.9
4,172,388	-				-0.7
4,172,388	-				+1.3
4,172,388	-				-0.9
4,172,401	+				-0.2
4,172,401	+				-0.2
4,172,402	-				-0.7
4,172,402	-				-0.1
4,172,410	-				+0.0
4,172,410	-				-0.7
4,172,417	-				-0.6
4,172,490	+				+0.7
4,172,490	+				+1.3
4,172,490	+				-0.3
4,172,491	-				-0.9
4,172,511	+				+1.3
4,172,512	-				-2.0
4,172,512	-				+0.9
4,172,512	-				-1.0
4,172,512	-				+0.7
4,172,598	+		Pf6N2E2_3581	0.11	+0.2
4,172,598	+		Pf6N2E2_3581	0.11	+0.2
4,172,653	-		Pf6N2E2_3581	0.15	+2.3
4,172,763	+		Pf6N2E2_3581	0.24	+0.1
4,172,772	+		Pf6N2E2_3581	0.25	+0.3
4,172,772	+		Pf6N2E2_3581	0.25	-0.2
4,172,773	-		Pf6N2E2_3581	0.25	-0.8
4,172,773	-		Pf6N2E2_3581	0.25	+0.2
4,172,973	+		Pf6N2E2_3581	0.40	-0.2
4,172,973	+		Pf6N2E2_3581	0.40	-0.2
4,172,973	+		Pf6N2E2_3581	0.40	-0.3
4,172,973	+		Pf6N2E2_3581	0.40	+0.1
4,172,974	-		Pf6N2E2_3581	0.40	-0.6
4,172,974	-		Pf6N2E2_3581	0.40	-0.3
4,172,974	-		Pf6N2E2_3581	0.40	+0.3
4,172,976	+		Pf6N2E2_3581	0.40	-0.2
4,172,976	+		Pf6N2E2_3581	0.40	-0.4
4,172,976	+		Pf6N2E2_3581	0.40	+0.5
4,172,976	+		Pf6N2E2_3581	0.40	-0.2
4,172,977	-		Pf6N2E2_3581	0.41	+0.3
4,172,977	-		Pf6N2E2_3581	0.41	+1.3
4,173,027	+		Pf6N2E2_3581	0.44	+1.3