Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3578

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
4,167,678	+				+2.6
4,167,679	-				+1.1
4,167,709	+				+1.3
4,167,721	+				+0.9
4,167,722	-				+0.7
4,167,722	-				-0.8
4,167,850	+		Pf6N2E2_3577	0.15	+0.6
4,167,851	-		Pf6N2E2_3577	0.15	+1.1
4,168,034	+		Pf6N2E2_3577	0.36	+0.8
4,168,094	+		Pf6N2E2_3577	0.43	+1.0
4,168,094	+		Pf6N2E2_3577	0.43	+0.9
4,168,095	-		Pf6N2E2_3577	0.43	+1.2
4,168,095	-		Pf6N2E2_3577	0.43	+1.5
4,168,095	-		Pf6N2E2_3577	0.43	+1.3
4,168,095	-		Pf6N2E2_3577	0.43	+1.1
4,168,248	+		Pf6N2E2_3577	0.61	+1.3
4,168,248	+		Pf6N2E2_3577	0.61	+0.8
4,168,248	+		Pf6N2E2_3577	0.61	+0.7
4,168,248	+		Pf6N2E2_3577	0.61	+1.2
4,168,249	-		Pf6N2E2_3577	0.61	+1.5
4,168,298	+		Pf6N2E2_3577	0.66	+1.4
4,168,298	+		Pf6N2E2_3577	0.66	+0.0
4,168,299	-		Pf6N2E2_3577	0.67	+0.8
4,168,299	-		Pf6N2E2_3577	0.67	+0.3
4,168,301	+		Pf6N2E2_3577	0.67	+3.3
4,168,301	+		Pf6N2E2_3577	0.67	+1.1
4,168,302	-		Pf6N2E2_3577	0.67	+1.2
4,168,302	-		Pf6N2E2_3577	0.67	+0.8
4,168,302	-		Pf6N2E2_3577	0.67	-0.5
4,168,302	-		Pf6N2E2_3577	0.67	+0.6
4,168,427	+		Pf6N2E2_3577	0.81	-0.1
4,168,427	+		Pf6N2E2_3577	0.81	+1.3
4,168,428	-		Pf6N2E2_3577	0.81	+0.0
4,168,576	+				+1.7
4,168,677	+				+1.0
4,168,926	+		Pf6N2E2_3578	0.26	+0.5
4,168,926	+		Pf6N2E2_3578	0.26	+0.8
4,168,926	+		Pf6N2E2_3578	0.26	+1.0
4,168,926	+		Pf6N2E2_3578	0.26	+1.1
4,168,926	+		Pf6N2E2_3578	0.26	+0.3
4,168,926	+		Pf6N2E2_3578	0.26	-0.1
4,168,926	+		Pf6N2E2_3578	0.26	+0.8
4,168,927	-		Pf6N2E2_3578	0.27	+1.1
4,168,927	-		Pf6N2E2_3578	0.27	+1.8
4,168,927	-		Pf6N2E2_3578	0.27	+1.1
4,168,927	-		Pf6N2E2_3578	0.27	+0.5
4,168,927	-		Pf6N2E2_3578	0.27	+0.4
4,168,927	-		Pf6N2E2_3578	0.27	+0.8
4,169,024	-		Pf6N2E2_3578	0.34	+0.7
4,169,024	-		Pf6N2E2_3578	0.34	+1.6
4,169,024	-		Pf6N2E2_3578	0.34	+0.3
4,169,037	+		Pf6N2E2_3578	0.35	+0.5
4,169,059	+		Pf6N2E2_3578	0.37	+1.3
4,169,059	+		Pf6N2E2_3578	0.37	+1.2
4,169,060	-		Pf6N2E2_3578	0.37	+0.4
4,169,060	-		Pf6N2E2_3578	0.37	+1.2
4,169,060	-		Pf6N2E2_3578	0.37	+1.3
4,169,060	-		Pf6N2E2_3578	0.37	+0.9
4,169,060	-		Pf6N2E2_3578	0.37	+0.6
4,169,060	-		Pf6N2E2_3578	0.37	+1.3
4,169,060	-		Pf6N2E2_3578	0.37	+1.2
4,169,089	+		Pf6N2E2_3578	0.39	+0.6
4,169,089	+		Pf6N2E2_3578	0.39	+0.8
4,169,089	+		Pf6N2E2_3578	0.39	-0.7
4,169,090	-		Pf6N2E2_3578	0.39	+0.9
4,169,090	-		Pf6N2E2_3578	0.39	+0.8
4,169,269	+		Pf6N2E2_3578	0.53	+1.3
4,169,270	-		Pf6N2E2_3578	0.53	+2.9
4,169,304	+		Pf6N2E2_3578	0.56	-0.8
4,169,305	-		Pf6N2E2_3578	0.56	+1.8
4,169,305	-		Pf6N2E2_3578	0.56	+1.4
4,169,395	+		Pf6N2E2_3578	0.63	+1.0
4,169,411	-		Pf6N2E2_3578	0.64	+0.3
4,169,422	+		Pf6N2E2_3578	0.65	+1.3
4,169,422	+		Pf6N2E2_3578	0.65	-0.1
4,169,423	-		Pf6N2E2_3578	0.65	+0.6
4,169,485	+		Pf6N2E2_3578	0.70	+0.5
4,169,485	+		Pf6N2E2_3578	0.70	-1.5
4,169,485	+		Pf6N2E2_3578	0.70	+1.1
4,169,485	+		Pf6N2E2_3578	0.70	+0.8
4,169,485	+		Pf6N2E2_3578	0.70	+0.8
4,169,486	-		Pf6N2E2_3578	0.70	+1.8
4,169,486	-		Pf6N2E2_3578	0.70	-0.4
4,169,486	-		Pf6N2E2_3578	0.70	+0.9
4,169,486	-		Pf6N2E2_3578	0.70	+1.2
4,169,486	-		Pf6N2E2_3578	0.70	+0.6
4,169,486	-		Pf6N2E2_3578	0.70	+1.2
4,169,486	-		Pf6N2E2_3578	0.70	-0.7
4,169,486	-		Pf6N2E2_3578	0.70	+0.8
4,169,486	-		Pf6N2E2_3578	0.70	+0.8
4,169,486	-		Pf6N2E2_3578	0.70	+1.3
4,169,518	+		Pf6N2E2_3578	0.73	+1.3
4,169,518	+		Pf6N2E2_3578	0.73	+2.9
4,169,518	+		Pf6N2E2_3578	0.73	+1.5
4,169,518	+		Pf6N2E2_3578	0.73	+1.2
4,169,518	+		Pf6N2E2_3578	0.73	+1.3
4,169,519	-		Pf6N2E2_3578	0.73	+1.3
4,169,519	-		Pf6N2E2_3578	0.73	+1.2
4,169,519	-		Pf6N2E2_3578	0.73	-0.1
4,169,593	+		Pf6N2E2_3578	0.79	+1.7
4,169,594	-		Pf6N2E2_3578	0.79	+1.3
4,169,840	+				+0.3
4,169,867	+				+0.5
4,169,867	+				+0.7
4,169,867	+				+0.3
4,169,867	+				+1.4
4,169,867	+				+1.0
4,169,867	+				+0.9
4,169,867	+				+1.0
4,169,867	+				+2.1
4,169,867	+				+1.3
4,169,867	+				+1.2
4,169,867	+				+0.9
4,169,867	+				+0.1
4,169,867	+				+1.6
4,169,867	+				+0.5
4,169,867	+				+1.2
4,169,867	+				+0.8
4,169,867	+				+2.0
4,169,867	+				+1.3
4,169,867	+				-0.5
4,169,868	-				+0.8
4,169,868	-				+0.1
4,169,868	-				+0.5
4,169,868	-				+0.2
4,169,868	-				+0.6
4,169,868	-				-0.3
4,169,868	-				-0.2
4,169,868	-				+0.4
4,169,868	-				+1.3
4,169,868	-				-0.9
4,169,868	-				-1.0
4,169,868	-				-0.6
4,169,868	-				+1.4
4,169,868	-				+0.5
4,169,868	-				-0.2
4,169,871	+				-0.2
4,169,871	+				+1.0
4,169,871	+				-0.1
4,169,871	+				-1.0
4,169,871	+				+1.3
4,169,871	+				+1.5
4,169,871	+				+1.0
4,169,871	+				+1.1
4,169,871	+				+0.6
4,169,871	+				+0.8
4,169,871	+				+1.5
4,169,871	+				+0.7
4,169,871	+				+1.1
4,169,872	-				+0.4
4,169,872	-				+1.0
4,169,872	-				+2.1
4,169,872	-				+0.2
4,169,872	-				+0.9
4,169,872	-				+0.1
4,169,872	-				+0.5
4,169,872	-				+0.0
4,169,872	-				-0.0
4,169,872	-				+1.2
4,169,872	-				+0.8
4,169,872	-				+0.8
4,169,873	+				+1.3
4,169,873	+				+0.7
4,169,873	+				+1.4
4,169,873	+				+1.4
4,169,873	+				+2.2
4,169,873	+				+1.0
4,169,873	+				+1.2
4,169,874	-				+1.4
4,169,874	-				+1.3
4,169,874	-				+0.9
4,169,874	-				+0.6
4,170,099	+		Pf6N2E2_3579	0.25	+0.2
4,170,099	+		Pf6N2E2_3579	0.25	+1.0
4,170,099	+		Pf6N2E2_3579	0.25	+1.0
4,170,099	+		Pf6N2E2_3579	0.25	+0.1
4,170,099	+		Pf6N2E2_3579	0.25	+1.2
4,170,099	+		Pf6N2E2_3579	0.25	+1.3
4,170,100	-		Pf6N2E2_3579	0.25	+0.6
4,170,100	-		Pf6N2E2_3579	0.25	+0.2
4,170,117	+		Pf6N2E2_3579	0.27	+0.6
4,170,117	+		Pf6N2E2_3579	0.27	+0.4
4,170,118	-		Pf6N2E2_3579	0.27	+0.7
4,170,118	-		Pf6N2E2_3579	0.27	+1.0
4,170,177	+		Pf6N2E2_3579	0.34	+0.2
4,170,178	-		Pf6N2E2_3579	0.34	+0.8
4,170,267	+		Pf6N2E2_3579	0.43	+1.4
4,170,267	+		Pf6N2E2_3579	0.43	-0.0
4,170,267	+		Pf6N2E2_3579	0.43	+1.1
4,170,268	-		Pf6N2E2_3579	0.43	+0.4
4,170,268	-		Pf6N2E2_3579	0.43	+0.3
4,170,279	+		Pf6N2E2_3579	0.45	+1.2
4,170,279	+		Pf6N2E2_3579	0.45	+0.7
4,170,279	+		Pf6N2E2_3579	0.45	+1.3
4,170,280	-		Pf6N2E2_3579	0.45	+1.3
4,170,280	-		Pf6N2E2_3579	0.45	+1.3
4,170,280	-		Pf6N2E2_3579	0.45	+0.5
4,170,280	-		Pf6N2E2_3579	0.45	+1.2
4,170,280	-		Pf6N2E2_3579	0.45	+1.4
4,170,280	-		Pf6N2E2_3579	0.45	+0.7
4,170,280	-		Pf6N2E2_3579	0.45	+0.6
4,170,280	-		Pf6N2E2_3579	0.45	+1.2
4,170,280	-		Pf6N2E2_3579	0.45	+1.8
4,170,280	-		Pf6N2E2_3579	0.45	+0.5
4,170,333	+		Pf6N2E2_3579	0.51	+0.5
4,170,333	+		Pf6N2E2_3579	0.51	+0.6
4,170,333	+		Pf6N2E2_3579	0.51	+0.9
4,170,334	-		Pf6N2E2_3579	0.51	+0.3
4,170,334	-		Pf6N2E2_3579	0.51	+1.3
4,170,454	+		Pf6N2E2_3579	0.64	+2.1
4,170,454	+		Pf6N2E2_3579	0.64	+0.6
4,170,505	+		Pf6N2E2_3579	0.69	+1.0
4,170,505	+		Pf6N2E2_3579	0.69	+1.7
4,170,505	+		Pf6N2E2_3579	0.69	+0.7
4,170,505	+		Pf6N2E2_3579	0.69	+0.8
4,170,505	+		Pf6N2E2_3579	0.69	+0.5
4,170,506	-		Pf6N2E2_3579	0.70	-0.1
4,170,507	+		Pf6N2E2_3579	0.70	+1.8
4,170,507	+		Pf6N2E2_3579	0.70	+0.7
4,170,508	-		Pf6N2E2_3579	0.70	+1.3
4,170,508	-		Pf6N2E2_3579	0.70	+1.3
4,170,508	-		Pf6N2E2_3579	0.70	+1.3
4,170,534	+		Pf6N2E2_3579	0.73	+1.5
4,170,534	+		Pf6N2E2_3579	0.73	+0.0
4,170,535	-		Pf6N2E2_3579	0.73	+1.2
4,170,606	+		Pf6N2E2_3579	0.80	+1.0
4,170,606	+		Pf6N2E2_3579	0.80	+1.9
4,170,607	-		Pf6N2E2_3579	0.81	-1.3
4,170,607	-		Pf6N2E2_3579	0.81	+1.1
4,170,607	-		Pf6N2E2_3579	0.81	+0.8
4,170,639	+		Pf6N2E2_3579	0.84	+1.5
4,170,654	+		Pf6N2E2_3579	0.86	+0.9
4,170,654	+		Pf6N2E2_3579	0.86	+0.3
4,170,654	+		Pf6N2E2_3579	0.86	+0.9
4,170,654	+		Pf6N2E2_3579	0.86	+0.5
4,170,654	+		Pf6N2E2_3579	0.86	+1.9
4,170,655	-		Pf6N2E2_3579	0.86	+0.5
4,170,655	-		Pf6N2E2_3579	0.86	+1.2
4,170,655	-		Pf6N2E2_3579	0.86	+1.3
4,170,655	-		Pf6N2E2_3579	0.86	+0.0
4,170,655	-		Pf6N2E2_3579	0.86	+2.3
4,170,696	+				+0.3
4,170,729	+				+0.3
4,170,729	+				+0.8
4,170,730	-				+1.9
4,170,730	-				+0.9
4,170,775	+				+0.5
4,170,775	+				+1.3
4,170,776	-				-0.2
4,170,776	-				+1.8
4,170,776	-				+0.8
4,170,776	-				+1.1
4,170,785	-				+1.2
4,170,846	+				-0.1
4,170,847	-				-0.4
4,170,847	-				-0.5
4,170,853	+				-0.0