Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3577

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3576 and Pf6N2E2_3577 overlap by 4 nucleotidesPf6N2E2_3577 and Pf6N2E2_3578 overlap by 4 nucleotides Pf6N2E2_3576 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 4,167,005 to 4,167,721 _3576 Pf6N2E2_3577 - ABC transporter for L-leucine/L-isoleucine/D-alanine, ATPase component 1 LivG (from data), at 4,167,718 to 4,168,590 _3577 Pf6N2E2_3578 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 4,168,587 to 4,169,867 _3578 Position (kb) 4167 4168 4169Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4166.846 kb on + strandat 4166.846 kb on + strandat 4166.846 kb on + strandat 4166.861 kb on + strandat 4166.862 kb on - strandat 4167.021 kb on + strandat 4167.021 kb on + strandat 4167.028 kb on + strandat 4167.028 kb on + strandat 4167.099 kb on + strand, within Pf6N2E2_3576at 4167.099 kb on + strand, within Pf6N2E2_3576at 4167.100 kb on - strand, within Pf6N2E2_3576at 4167.100 kb on - strand, within Pf6N2E2_3576at 4167.100 kb on - strand, within Pf6N2E2_3576at 4167.100 kb on - strand, within Pf6N2E2_3576at 4167.100 kb on - strand, within Pf6N2E2_3576at 4167.100 kb on - strand, within Pf6N2E2_3576at 4167.100 kb on - strand, within Pf6N2E2_3576at 4167.387 kb on + strand, within Pf6N2E2_3576at 4167.387 kb on + strand, within Pf6N2E2_3576at 4167.387 kb on + strand, within Pf6N2E2_3576at 4167.388 kb on - strand, within Pf6N2E2_3576at 4167.495 kb on + strand, within Pf6N2E2_3576at 4167.495 kb on + strand, within Pf6N2E2_3576at 4167.495 kb on + strand, within Pf6N2E2_3576at 4167.495 kb on + strand, within Pf6N2E2_3576at 4167.495 kb on + strand, within Pf6N2E2_3576at 4167.496 kb on - strand, within Pf6N2E2_3576at 4167.531 kb on + strand, within Pf6N2E2_3576at 4167.531 kb on + strand, within Pf6N2E2_3576at 4167.531 kb on + strand, within Pf6N2E2_3576at 4167.531 kb on + strand, within Pf6N2E2_3576at 4167.531 kb on + strand, within Pf6N2E2_3576at 4167.531 kb on + strand, within Pf6N2E2_3576at 4167.532 kb on - strand, within Pf6N2E2_3576at 4167.532 kb on - strand, within Pf6N2E2_3576at 4167.532 kb on - strand, within Pf6N2E2_3576at 4167.532 kb on - strand, within Pf6N2E2_3576at 4167.532 kb on - strand, within Pf6N2E2_3576at 4167.678 kb on + strandat 4167.679 kb on - strandat 4167.709 kb on + strandat 4167.721 kb on + strandat 4167.722 kb on - strandat 4167.722 kb on - strandat 4167.850 kb on + strand, within Pf6N2E2_3577at 4167.851 kb on - strand, within Pf6N2E2_3577at 4168.034 kb on + strand, within Pf6N2E2_3577at 4168.094 kb on + strand, within Pf6N2E2_3577at 4168.094 kb on + strand, within Pf6N2E2_3577at 4168.095 kb on - strand, within Pf6N2E2_3577at 4168.095 kb on - strand, within Pf6N2E2_3577at 4168.095 kb on - strand, within Pf6N2E2_3577at 4168.095 kb on - strand, within Pf6N2E2_3577at 4168.248 kb on + strand, within Pf6N2E2_3577at 4168.248 kb on + strand, within Pf6N2E2_3577at 4168.248 kb on + strand, within Pf6N2E2_3577at 4168.248 kb on + strand, within Pf6N2E2_3577at 4168.249 kb on - strand, within Pf6N2E2_3577at 4168.298 kb on + strand, within Pf6N2E2_3577at 4168.298 kb on + strand, within Pf6N2E2_3577at 4168.299 kb on - strand, within Pf6N2E2_3577at 4168.299 kb on - strand, within Pf6N2E2_3577at 4168.301 kb on + strand, within Pf6N2E2_3577at 4168.301 kb on + strand, within Pf6N2E2_3577at 4168.302 kb on - strand, within Pf6N2E2_3577at 4168.302 kb on - strand, within Pf6N2E2_3577at 4168.302 kb on - strand, within Pf6N2E2_3577at 4168.302 kb on - strand, within Pf6N2E2_3577at 4168.427 kb on + strand, within Pf6N2E2_3577at 4168.427 kb on + strand, within Pf6N2E2_3577at 4168.428 kb on - strand, within Pf6N2E2_3577at 4168.576 kb on + strandat 4168.677 kb on + strandat 4168.926 kb on + strand, within Pf6N2E2_3578at 4168.926 kb on + strand, within Pf6N2E2_3578at 4168.926 kb on + strand, within Pf6N2E2_3578at 4168.926 kb on + strand, within Pf6N2E2_3578at 4168.926 kb on + strand, within Pf6N2E2_3578at 4168.926 kb on + strand, within Pf6N2E2_3578at 4168.926 kb on + strand, within Pf6N2E2_3578at 4168.927 kb on - strand, within Pf6N2E2_3578at 4168.927 kb on - strand, within Pf6N2E2_3578at 4168.927 kb on - strand, within Pf6N2E2_3578at 4168.927 kb on - strand, within Pf6N2E2_3578at 4168.927 kb on - strand, within Pf6N2E2_3578at 4168.927 kb on - strand, within Pf6N2E2_3578at 4169.024 kb on - strand, within Pf6N2E2_3578at 4169.024 kb on - strand, within Pf6N2E2_3578at 4169.024 kb on - strand, within Pf6N2E2_3578at 4169.037 kb on + strand, within Pf6N2E2_3578at 4169.059 kb on + strand, within Pf6N2E2_3578at 4169.059 kb on + strand, within Pf6N2E2_3578at 4169.060 kb on - strand, within Pf6N2E2_3578at 4169.060 kb on - strand, within Pf6N2E2_3578at 4169.060 kb on - strand, within Pf6N2E2_3578at 4169.060 kb on - strand, within Pf6N2E2_3578at 4169.060 kb on - strand, within Pf6N2E2_3578at 4169.060 kb on - strand, within Pf6N2E2_3578at 4169.060 kb on - strand, within Pf6N2E2_3578at 4169.089 kb on + strand, within Pf6N2E2_3578at 4169.089 kb on + strand, within Pf6N2E2_3578at 4169.089 kb on + strand, within Pf6N2E2_3578at 4169.090 kb on - strand, within Pf6N2E2_3578at 4169.090 kb on - strand, within Pf6N2E2_3578at 4169.269 kb on + strand, within Pf6N2E2_3578at 4169.270 kb on - strand, within Pf6N2E2_3578at 4169.304 kb on + strand, within Pf6N2E2_3578at 4169.305 kb on - strand, within Pf6N2E2_3578at 4169.305 kb on - strand, within Pf6N2E2_3578at 4169.395 kb on + strand, within Pf6N2E2_3578at 4169.411 kb on - strand, within Pf6N2E2_3578at 4169.422 kb on + strand, within Pf6N2E2_3578at 4169.422 kb on + strand, within Pf6N2E2_3578at 4169.423 kb on - strand, within Pf6N2E2_3578at 4169.485 kb on + strand, within Pf6N2E2_3578at 4169.485 kb on + strand, within Pf6N2E2_3578at 4169.485 kb on + strand, within Pf6N2E2_3578at 4169.485 kb on + strand, within Pf6N2E2_3578at 4169.485 kb on + strand, within Pf6N2E2_3578at 4169.486 kb on - strand, within Pf6N2E2_3578at 4169.486 kb on - strand, within Pf6N2E2_3578at 4169.486 kb on - strand, within Pf6N2E2_3578at 4169.486 kb on - strand, within Pf6N2E2_3578at 4169.486 kb on - strand, within Pf6N2E2_3578at 4169.486 kb on - strand, within Pf6N2E2_3578at 4169.486 kb on - strand, within Pf6N2E2_3578at 4169.486 kb on - strand, within Pf6N2E2_3578at 4169.486 kb on - strand, within Pf6N2E2_3578at 4169.486 kb on - strand, within Pf6N2E2_3578at 4169.518 kb on + strand, within Pf6N2E2_3578at 4169.518 kb on + strand, within Pf6N2E2_3578at 4169.518 kb on + strand, within Pf6N2E2_3578at 4169.518 kb on + strand, within Pf6N2E2_3578at 4169.518 kb on + strand, within Pf6N2E2_3578at 4169.519 kb on - strand, within Pf6N2E2_3578at 4169.519 kb on - strand, within Pf6N2E2_3578at 4169.519 kb on - strand, within Pf6N2E2_3578

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
remove
4,166,846 + +0.4
4,166,846 + -0.4
4,166,846 + -1.0
4,166,861 + -0.9
4,166,862 - +0.6
4,167,021 + +1.1
4,167,021 + +0.4
4,167,028 + +0.7
4,167,028 + +0.8
4,167,099 + Pf6N2E2_3576 0.13 +0.6
4,167,099 + Pf6N2E2_3576 0.13 +1.3
4,167,100 - Pf6N2E2_3576 0.13 +0.7
4,167,100 - Pf6N2E2_3576 0.13 +0.6
4,167,100 - Pf6N2E2_3576 0.13 +0.1
4,167,100 - Pf6N2E2_3576 0.13 +1.3
4,167,100 - Pf6N2E2_3576 0.13 +1.5
4,167,100 - Pf6N2E2_3576 0.13 +0.8
4,167,100 - Pf6N2E2_3576 0.13 +1.2
4,167,387 + Pf6N2E2_3576 0.53 +0.2
4,167,387 + Pf6N2E2_3576 0.53 +1.1
4,167,387 + Pf6N2E2_3576 0.53 +1.5
4,167,388 - Pf6N2E2_3576 0.53 +0.8
4,167,495 + Pf6N2E2_3576 0.68 +1.0
4,167,495 + Pf6N2E2_3576 0.68 -0.7
4,167,495 + Pf6N2E2_3576 0.68 +0.6
4,167,495 + Pf6N2E2_3576 0.68 +2.3
4,167,495 + Pf6N2E2_3576 0.68 +1.3
4,167,496 - Pf6N2E2_3576 0.68 +1.0
4,167,531 + Pf6N2E2_3576 0.73 -1.8
4,167,531 + Pf6N2E2_3576 0.73 +0.9
4,167,531 + Pf6N2E2_3576 0.73 +0.3
4,167,531 + Pf6N2E2_3576 0.73 +1.3
4,167,531 + Pf6N2E2_3576 0.73 -0.7
4,167,531 + Pf6N2E2_3576 0.73 +1.1
4,167,532 - Pf6N2E2_3576 0.74 +0.3
4,167,532 - Pf6N2E2_3576 0.74 -0.0
4,167,532 - Pf6N2E2_3576 0.74 +2.1
4,167,532 - Pf6N2E2_3576 0.74 -0.2
4,167,532 - Pf6N2E2_3576 0.74 +1.0
4,167,678 + +2.6
4,167,679 - +1.1
4,167,709 + +1.3
4,167,721 + +0.9
4,167,722 - +0.7
4,167,722 - -0.8
4,167,850 + Pf6N2E2_3577 0.15 +0.6
4,167,851 - Pf6N2E2_3577 0.15 +1.1
4,168,034 + Pf6N2E2_3577 0.36 +0.8
4,168,094 + Pf6N2E2_3577 0.43 +1.0
4,168,094 + Pf6N2E2_3577 0.43 +0.9
4,168,095 - Pf6N2E2_3577 0.43 +1.2
4,168,095 - Pf6N2E2_3577 0.43 +1.5
4,168,095 - Pf6N2E2_3577 0.43 +1.3
4,168,095 - Pf6N2E2_3577 0.43 +1.1
4,168,248 + Pf6N2E2_3577 0.61 +1.3
4,168,248 + Pf6N2E2_3577 0.61 +0.8
4,168,248 + Pf6N2E2_3577 0.61 +0.7
4,168,248 + Pf6N2E2_3577 0.61 +1.2
4,168,249 - Pf6N2E2_3577 0.61 +1.5
4,168,298 + Pf6N2E2_3577 0.66 +1.4
4,168,298 + Pf6N2E2_3577 0.66 +0.0
4,168,299 - Pf6N2E2_3577 0.67 +0.8
4,168,299 - Pf6N2E2_3577 0.67 +0.3
4,168,301 + Pf6N2E2_3577 0.67 +3.3
4,168,301 + Pf6N2E2_3577 0.67 +1.1
4,168,302 - Pf6N2E2_3577 0.67 +1.2
4,168,302 - Pf6N2E2_3577 0.67 +0.8
4,168,302 - Pf6N2E2_3577 0.67 -0.5
4,168,302 - Pf6N2E2_3577 0.67 +0.6
4,168,427 + Pf6N2E2_3577 0.81 -0.1
4,168,427 + Pf6N2E2_3577 0.81 +1.3
4,168,428 - Pf6N2E2_3577 0.81 +0.0
4,168,576 + +1.7
4,168,677 + +1.0
4,168,926 + Pf6N2E2_3578 0.26 +0.5
4,168,926 + Pf6N2E2_3578 0.26 +0.8
4,168,926 + Pf6N2E2_3578 0.26 +1.0
4,168,926 + Pf6N2E2_3578 0.26 +1.1
4,168,926 + Pf6N2E2_3578 0.26 +0.3
4,168,926 + Pf6N2E2_3578 0.26 -0.1
4,168,926 + Pf6N2E2_3578 0.26 +0.8
4,168,927 - Pf6N2E2_3578 0.27 +1.1
4,168,927 - Pf6N2E2_3578 0.27 +1.8
4,168,927 - Pf6N2E2_3578 0.27 +1.1
4,168,927 - Pf6N2E2_3578 0.27 +0.5
4,168,927 - Pf6N2E2_3578 0.27 +0.4
4,168,927 - Pf6N2E2_3578 0.27 +0.8
4,169,024 - Pf6N2E2_3578 0.34 +0.7
4,169,024 - Pf6N2E2_3578 0.34 +1.6
4,169,024 - Pf6N2E2_3578 0.34 +0.3
4,169,037 + Pf6N2E2_3578 0.35 +0.5
4,169,059 + Pf6N2E2_3578 0.37 +1.3
4,169,059 + Pf6N2E2_3578 0.37 +1.2
4,169,060 - Pf6N2E2_3578 0.37 +0.4
4,169,060 - Pf6N2E2_3578 0.37 +1.2
4,169,060 - Pf6N2E2_3578 0.37 +1.3
4,169,060 - Pf6N2E2_3578 0.37 +0.9
4,169,060 - Pf6N2E2_3578 0.37 +0.6
4,169,060 - Pf6N2E2_3578 0.37 +1.3
4,169,060 - Pf6N2E2_3578 0.37 +1.2
4,169,089 + Pf6N2E2_3578 0.39 +0.6
4,169,089 + Pf6N2E2_3578 0.39 +0.8
4,169,089 + Pf6N2E2_3578 0.39 -0.7
4,169,090 - Pf6N2E2_3578 0.39 +0.9
4,169,090 - Pf6N2E2_3578 0.39 +0.8
4,169,269 + Pf6N2E2_3578 0.53 +1.3
4,169,270 - Pf6N2E2_3578 0.53 +2.9
4,169,304 + Pf6N2E2_3578 0.56 -0.8
4,169,305 - Pf6N2E2_3578 0.56 +1.8
4,169,305 - Pf6N2E2_3578 0.56 +1.4
4,169,395 + Pf6N2E2_3578 0.63 +1.0
4,169,411 - Pf6N2E2_3578 0.64 +0.3
4,169,422 + Pf6N2E2_3578 0.65 +1.3
4,169,422 + Pf6N2E2_3578 0.65 -0.1
4,169,423 - Pf6N2E2_3578 0.65 +0.6
4,169,485 + Pf6N2E2_3578 0.70 +0.5
4,169,485 + Pf6N2E2_3578 0.70 -1.5
4,169,485 + Pf6N2E2_3578 0.70 +1.1
4,169,485 + Pf6N2E2_3578 0.70 +0.8
4,169,485 + Pf6N2E2_3578 0.70 +0.8
4,169,486 - Pf6N2E2_3578 0.70 +1.8
4,169,486 - Pf6N2E2_3578 0.70 -0.4
4,169,486 - Pf6N2E2_3578 0.70 +0.9
4,169,486 - Pf6N2E2_3578 0.70 +1.2
4,169,486 - Pf6N2E2_3578 0.70 +0.6
4,169,486 - Pf6N2E2_3578 0.70 +1.2
4,169,486 - Pf6N2E2_3578 0.70 -0.7
4,169,486 - Pf6N2E2_3578 0.70 +0.8
4,169,486 - Pf6N2E2_3578 0.70 +0.8
4,169,486 - Pf6N2E2_3578 0.70 +1.3
4,169,518 + Pf6N2E2_3578 0.73 +1.3
4,169,518 + Pf6N2E2_3578 0.73 +2.9
4,169,518 + Pf6N2E2_3578 0.73 +1.5
4,169,518 + Pf6N2E2_3578 0.73 +1.2
4,169,518 + Pf6N2E2_3578 0.73 +1.3
4,169,519 - Pf6N2E2_3578 0.73 +1.3
4,169,519 - Pf6N2E2_3578 0.73 +1.2
4,169,519 - Pf6N2E2_3578 0.73 -0.1

Or see this region's nucleotide sequence