Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3453

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
4,020,730	+		Pf6N2E2_3452	0.52	-0.3
4,020,730	+		Pf6N2E2_3452	0.52	-1.5
4,020,730	+		Pf6N2E2_3452	0.52	-0.3
4,020,730	+		Pf6N2E2_3452	0.52	-0.0
4,020,730	+		Pf6N2E2_3452	0.52	-0.3
4,020,730	+		Pf6N2E2_3452	0.52	+0.5
4,020,730	+		Pf6N2E2_3452	0.52	-0.6
4,020,731	-		Pf6N2E2_3452	0.52	+0.1
4,020,926	+		Pf6N2E2_3452	0.65	+0.1
4,020,926	+		Pf6N2E2_3452	0.65	-0.1
4,020,926	+		Pf6N2E2_3452	0.65	+0.7
4,020,926	+		Pf6N2E2_3452	0.65	-1.1
4,020,927	-		Pf6N2E2_3452	0.65	-0.3
4,020,993	-		Pf6N2E2_3452	0.69	+1.3
4,020,993	-		Pf6N2E2_3452	0.69	-0.2
4,021,030	+		Pf6N2E2_3452	0.72	-0.2
4,021,030	+		Pf6N2E2_3452	0.72	-0.5
4,021,030	+		Pf6N2E2_3452	0.72	+0.7
4,021,030	+		Pf6N2E2_3452	0.72	+2.3
4,021,030	+		Pf6N2E2_3452	0.72	+0.1
4,021,030	+		Pf6N2E2_3452	0.72	-1.0
4,021,030	+		Pf6N2E2_3452	0.72	-0.7
4,021,031	-		Pf6N2E2_3452	0.72	-0.6
4,021,031	-		Pf6N2E2_3452	0.72	+0.6
4,021,031	-		Pf6N2E2_3452	0.72	-0.5
4,021,031	-		Pf6N2E2_3452	0.72	-0.9
4,021,449	-				+0.1
4,021,485	+				-2.2
4,021,485	+				-2.1
4,021,486	-				-0.2
4,021,486	-				+2.3
4,021,486	-				+0.5
4,021,487	+				-0.1
4,021,487	+				-0.6
4,021,556	+				-1.4
4,021,556	+				-0.1
4,021,556	+				-1.9
4,021,556	+				-0.6
4,021,556	+				-0.7
4,021,557	-				+0.2
4,021,557	-				+0.0
4,021,557	-				-0.0
4,021,557	-				+0.3
4,021,557	-				+1.6
4,021,557	-				-0.2
4,021,573	-				+0.1
4,021,717	+		Pf6N2E2_3453	0.12	-0.2
4,021,718	-		Pf6N2E2_3453	0.12	+1.0
4,021,913	+		Pf6N2E2_3453	0.33	+1.3
4,021,914	-		Pf6N2E2_3453	0.33	-2.5
4,021,914	-		Pf6N2E2_3453	0.33	+0.3
4,021,914	-		Pf6N2E2_3453	0.33	+0.3
4,021,914	-		Pf6N2E2_3453	0.33	-0.1
4,021,914	-		Pf6N2E2_3453	0.33	-0.4
4,022,089	+		Pf6N2E2_3453	0.51	-1.1
4,022,089	+		Pf6N2E2_3453	0.51	+0.4
4,022,089	+		Pf6N2E2_3453	0.51	-0.4
4,022,093	+		Pf6N2E2_3453	0.52	-1.0
4,022,093	+		Pf6N2E2_3453	0.52	-0.6
4,022,093	+		Pf6N2E2_3453	0.52	+0.3
4,022,093	+		Pf6N2E2_3453	0.52	+1.3
4,022,094	-		Pf6N2E2_3453	0.52	+0.3
4,022,094	-		Pf6N2E2_3453	0.52	-0.6
4,022,094	-		Pf6N2E2_3453	0.52	-0.3
4,022,094	-		Pf6N2E2_3453	0.52	+0.5
4,022,094	-		Pf6N2E2_3453	0.52	+0.3
4,022,094	-		Pf6N2E2_3453	0.52	+0.0
4,022,094	-		Pf6N2E2_3453	0.52	+0.1
4,022,094	-		Pf6N2E2_3453	0.52	-0.3
4,022,094	-		Pf6N2E2_3453	0.52	-0.1
4,022,094	-		Pf6N2E2_3453	0.52	+0.5
4,022,094	-		Pf6N2E2_3453	0.52	-0.9
4,022,143	+		Pf6N2E2_3453	0.57	+0.3
4,022,144	-		Pf6N2E2_3453	0.57	+0.3
4,022,144	-		Pf6N2E2_3453	0.57	+0.4
4,022,206	+		Pf6N2E2_3453	0.64	-0.8
4,022,206	+		Pf6N2E2_3453	0.64	-0.7
4,022,207	-		Pf6N2E2_3453	0.64	-0.7
4,022,242	+		Pf6N2E2_3453	0.67	+1.3
4,022,242	+		Pf6N2E2_3453	0.67	-0.8
4,022,242	+		Pf6N2E2_3453	0.67	-2.0
4,022,242	+		Pf6N2E2_3453	0.67	-2.8
4,022,243	-		Pf6N2E2_3453	0.68	-0.3
4,022,426	-		Pf6N2E2_3453	0.87	-0.7
4,022,460	+				-3.7
4,022,460	+				-1.8
4,022,460	+				+0.3
4,022,460	+				-3.8
4,022,460	+				-3.0
4,022,476	+				-1.6
4,022,476	+				-3.2
4,022,606	+				-3.9
4,022,606	+				-2.0
4,022,606	+				-2.6
4,022,607	-				-0.1
4,022,607	-				+0.3
4,022,612	+				-1.3
4,022,612	+				-2.8
4,022,612	+				-2.6
4,022,612	+				-2.1
4,022,613	-				-0.7
4,022,615	+				-0.7
4,022,615	+				-4.1
4,022,615	+				+0.3
4,022,615	+				-1.5
4,022,633	-				+1.3
4,022,675	-				-0.3
4,022,681	+				+0.3
4,022,681	+				-3.6
4,022,681	+				-1.7
4,022,681	+				-1.7
4,022,681	+				-3.0
4,022,681	+				-3.8
4,022,724	+				-3.8
4,023,402	-		Pf6N2E2_3454	0.51	+1.3