Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3278

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
3,780,194	-		Pf6N2E2_3276	0.83	+1.4
3,780,253	+		Pf6N2E2_3276	0.87	+0.0
3,780,254	-		Pf6N2E2_3276	0.87	-0.6
3,780,254	-		Pf6N2E2_3276	0.87	+0.1
3,780,254	-		Pf6N2E2_3276	0.87	+0.1
3,780,315	+				-0.0
3,780,315	+				-2.9
3,780,316	-				+0.2
3,780,316	-				+0.7
3,780,316	-				-0.8
3,780,424	-				-0.3
3,780,424	-				-0.1
3,780,424	-				+0.1
3,780,426	+				+1.4
3,780,426	+				+0.6
3,780,426	+				+0.8
3,780,426	+				-0.0
3,780,427	-				-0.6
3,780,427	-				+0.4
3,780,427	-				+0.4
3,780,427	-				+0.4
3,780,427	-				+0.5
3,780,457	+				-0.3
3,780,458	-				+1.0
3,780,458	-				+0.4
3,780,458	-				+0.0
3,780,714	+		Pf6N2E2_3277	0.73	+0.2
3,780,714	+		Pf6N2E2_3277	0.73	-0.4
3,780,715	-		Pf6N2E2_3277	0.73	+0.6
3,780,792	+				+0.9
3,780,792	+				+0.2
3,780,793	-				+1.4
3,780,793	-				+0.7
3,780,793	-				+0.6
3,780,950	+				-2.1
3,781,189	+				-0.9
3,781,216	-				-1.7
3,781,295	+		Pf6N2E2_3278	0.14	-1.1
3,781,296	-		Pf6N2E2_3278	0.14	-2.8
3,781,296	-		Pf6N2E2_3278	0.14	+1.4
3,781,410	+		Pf6N2E2_3278	0.22	-0.4
3,781,411	-		Pf6N2E2_3278	0.23	-0.6
3,781,463	+		Pf6N2E2_3278	0.26	-0.2
3,781,463	+		Pf6N2E2_3278	0.26	-1.2
3,781,463	+		Pf6N2E2_3278	0.26	+0.2
3,781,464	-		Pf6N2E2_3278	0.26	+0.4
3,781,478	+		Pf6N2E2_3278	0.27	-1.0
3,781,478	+		Pf6N2E2_3278	0.27	-0.9
3,781,478	+		Pf6N2E2_3278	0.27	-1.1
3,781,478	+		Pf6N2E2_3278	0.27	-1.8
3,781,478	+		Pf6N2E2_3278	0.27	-0.1
3,781,478	+		Pf6N2E2_3278	0.27	+0.0
3,781,479	-		Pf6N2E2_3278	0.28	+0.0
3,781,479	-		Pf6N2E2_3278	0.28	+0.0
3,781,517	+		Pf6N2E2_3278	0.30	-2.6
3,781,517	+		Pf6N2E2_3278	0.30	-0.6
3,781,518	-		Pf6N2E2_3278	0.30	-1.1
3,781,518	-		Pf6N2E2_3278	0.30	-1.0
3,781,518	-		Pf6N2E2_3278	0.30	-0.6
3,781,839	-		Pf6N2E2_3278	0.54	-1.0
3,781,913	+		Pf6N2E2_3278	0.59	-0.5
3,781,944	-		Pf6N2E2_3278	0.62	-0.7
3,781,944	-		Pf6N2E2_3278	0.62	-0.7
3,781,966	-		Pf6N2E2_3278	0.63	+0.2
3,782,163	+		Pf6N2E2_3278	0.78	-0.9
3,782,164	-		Pf6N2E2_3278	0.78	-0.2
3,782,246	+		Pf6N2E2_3278	0.84	-0.9
3,782,246	+		Pf6N2E2_3278	0.84	+0.5
3,782,246	+		Pf6N2E2_3278	0.84	-1.2
3,782,247	-		Pf6N2E2_3278	0.84	-0.6
3,782,247	-		Pf6N2E2_3278	0.84	-0.9
3,782,247	-		Pf6N2E2_3278	0.84	-0.2
3,782,247	-		Pf6N2E2_3278	0.84	-1.6
3,782,247	-		Pf6N2E2_3278	0.84	-0.1
3,782,247	-		Pf6N2E2_3278	0.84	-1.0
3,782,339	-				-0.9
3,782,339	-				-0.8
3,782,587	+				+1.4
3,782,854	+		Pf6N2E2_3279	0.56	-0.9
3,782,855	-		Pf6N2E2_3279	0.56	+0.4
3,782,855	-		Pf6N2E2_3279	0.56	+0.4
3,782,855	-		Pf6N2E2_3279	0.56	+0.7
3,782,966	+		Pf6N2E2_3279	0.77	+1.1
3,782,966	+		Pf6N2E2_3279	0.77	-0.5
3,782,966	+		Pf6N2E2_3279	0.77	-0.2
3,782,967	-		Pf6N2E2_3279	0.78	+2.4
3,782,967	-		Pf6N2E2_3279	0.78	-0.2
3,782,967	-		Pf6N2E2_3279	0.78	+0.7
3,783,043	+				+0.2
3,783,043	+				+1.4
3,783,043	+				-0.2
3,783,111	-				+0.3
3,783,111	-				+2.4
3,783,180	-				-0.2
3,783,186	+				+1.4
3,783,187	-				+0.0
3,783,450	+		Pf6N2E2_3280	0.15	-1.1
3,783,451	-		Pf6N2E2_3280	0.15	-0.1
3,783,451	-		Pf6N2E2_3280	0.15	-1.6