Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2802

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
3,287,486	+		Pf6N2E2_2801	0.38	-0.6
3,287,486	+		Pf6N2E2_2801	0.38	+0.5
3,287,487	-		Pf6N2E2_2801	0.38	-0.1
3,287,636	+		Pf6N2E2_2801	0.51	-2.4
3,287,637	-		Pf6N2E2_2801	0.51	+0.4
3,287,637	-		Pf6N2E2_2801	0.51	-1.1
3,287,771	+		Pf6N2E2_2801	0.62	+0.5
3,287,771	+		Pf6N2E2_2801	0.62	+0.6
3,287,772	-		Pf6N2E2_2801	0.62	-0.4
3,287,804	+		Pf6N2E2_2801	0.65	+0.7
3,287,804	+		Pf6N2E2_2801	0.65	-0.2
3,287,804	+		Pf6N2E2_2801	0.65	-0.2
3,287,804	+		Pf6N2E2_2801	0.65	+0.1
3,287,805	-		Pf6N2E2_2801	0.65	+0.3
3,287,838	+		Pf6N2E2_2801	0.68	+1.4
3,287,839	-		Pf6N2E2_2801	0.68	-1.3
3,287,993	+		Pf6N2E2_2801	0.81	-0.3
3,287,993	+		Pf6N2E2_2801	0.81	+0.6
3,287,993	+		Pf6N2E2_2801	0.81	+0.9
3,287,994	-		Pf6N2E2_2801	0.81	-0.6
3,288,045	-		Pf6N2E2_2801	0.86	-2.7
3,288,219	-				-0.3
3,288,344	+				-0.5
3,288,344	+				+0.2
3,288,344	+				+0.6
3,288,345	-				+0.5
3,288,345	-				+0.9
3,288,353	+				+0.3
3,288,353	+				+0.9
3,288,353	+				+0.3
3,288,353	+				+0.4
3,288,354	-				+0.3
3,288,455	-				+1.0
3,288,469	+		Pf6N2E2_2802	0.10	+0.9
3,288,469	+		Pf6N2E2_2802	0.10	+1.4
3,288,470	-		Pf6N2E2_2802	0.10	+0.3
3,288,574	-		Pf6N2E2_2802	0.19	+1.2
3,288,686	+		Pf6N2E2_2802	0.29	+0.7
3,288,686	+		Pf6N2E2_2802	0.29	+1.2
3,288,686	+		Pf6N2E2_2802	0.29	+1.5
3,288,686	+		Pf6N2E2_2802	0.29	+0.5
3,288,686	+		Pf6N2E2_2802	0.29	+0.9
3,288,687	-		Pf6N2E2_2802	0.29	+2.0
3,288,687	-		Pf6N2E2_2802	0.29	+1.0
3,288,687	-		Pf6N2E2_2802	0.29	+1.0
3,288,771	-		Pf6N2E2_2802	0.36	+0.2
3,288,771	-		Pf6N2E2_2802	0.36	+0.6
3,288,896	+		Pf6N2E2_2802	0.47	+1.0
3,288,896	+		Pf6N2E2_2802	0.47	+1.3
3,288,896	+		Pf6N2E2_2802	0.47	+1.0
3,288,896	+		Pf6N2E2_2802	0.47	+0.8
3,288,896	+		Pf6N2E2_2802	0.47	-1.2
3,288,896	+		Pf6N2E2_2802	0.47	+1.1
3,288,896	+		Pf6N2E2_2802	0.47	+0.9
3,288,896	+		Pf6N2E2_2802	0.47	+1.0
3,288,897	-		Pf6N2E2_2802	0.47	+1.7
3,288,897	-		Pf6N2E2_2802	0.47	+2.3
3,289,145	+		Pf6N2E2_2802	0.69	+1.5
3,289,146	-		Pf6N2E2_2802	0.69	+0.8
3,289,146	-		Pf6N2E2_2802	0.69	+1.7
3,289,146	-		Pf6N2E2_2802	0.69	+1.4
3,289,554	+				+1.5
3,289,659	+				+0.1
3,289,659	+				+0.1
3,289,944	+		Pf6N2E2_2803	0.30	+0.2
3,289,945	-		Pf6N2E2_2803	0.30	-0.1
3,290,074	-		Pf6N2E2_2803	0.42	+1.4
3,290,074	-		Pf6N2E2_2803	0.42	+0.5
3,290,074	-		Pf6N2E2_2803	0.42	-0.6
3,290,193	+		Pf6N2E2_2803	0.54	-0.0
3,290,193	+		Pf6N2E2_2803	0.54	+0.6
3,290,379	+		Pf6N2E2_2803	0.72	-0.2
3,290,380	-		Pf6N2E2_2803	0.72	+0.1
3,290,380	-		Pf6N2E2_2803	0.72	-1.1
3,290,380	-		Pf6N2E2_2803	0.72	-0.1
3,290,380	-		Pf6N2E2_2803	0.72	-0.5
3,290,394	+		Pf6N2E2_2803	0.74	+0.5