Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1678

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
1,983,411	+		Pf6N2E2_1677	0.37	+2.4
1,983,665	+		Pf6N2E2_1677	0.61	+0.4
1,983,665	+		Pf6N2E2_1677	0.61	+1.6
1,983,689	+		Pf6N2E2_1677	0.63	+1.2
1,983,689	+		Pf6N2E2_1677	0.63	+0.5
1,983,689	+		Pf6N2E2_1677	0.63	+1.3
1,983,690	-		Pf6N2E2_1677	0.63	+1.1
1,983,690	-		Pf6N2E2_1677	0.63	+0.6
1,983,690	-		Pf6N2E2_1677	0.63	+1.7
1,983,698	+		Pf6N2E2_1677	0.64	+0.6
1,983,699	-		Pf6N2E2_1677	0.64	+1.4
1,983,699	-		Pf6N2E2_1677	0.64	+1.0
1,983,792	-		Pf6N2E2_1677	0.73	+1.4
1,984,130	+				-0.7
1,984,209	+				+0.9
1,984,209	+				+1.6
1,984,209	+				+0.9
1,984,209	+				+1.2
1,984,209	+				+1.8
1,984,209	+				+0.9
1,984,209	+				+1.1
1,984,209	+				+2.1
1,984,209	+				+1.3
1,984,210	-				-0.1
1,984,210	-				+1.1
1,984,210	-				+1.1
1,984,210	-				+0.9
1,984,282	+				+1.0
1,984,283	-				+0.4
1,984,302	-				+1.2
1,984,347	+		Pf6N2E2_1678	0.12	+1.4
1,984,347	+		Pf6N2E2_1678	0.12	+1.4
1,984,348	-		Pf6N2E2_1678	0.12	+0.7
1,984,574	+		Pf6N2E2_1678	0.30	+1.5
1,984,624	+		Pf6N2E2_1678	0.34	+1.2
1,984,687	+		Pf6N2E2_1678	0.39	+1.3
1,984,687	+		Pf6N2E2_1678	0.39	-1.1
1,984,688	-		Pf6N2E2_1678	0.39	+0.4
1,984,750	+		Pf6N2E2_1678	0.43	+2.7
1,984,761	+		Pf6N2E2_1678	0.44	+0.9
1,984,761	+		Pf6N2E2_1678	0.44	+0.4
1,984,761	+		Pf6N2E2_1678	0.44	+1.3
1,984,762	-		Pf6N2E2_1678	0.44	+1.9
1,984,769	+		Pf6N2E2_1678	0.45	+1.6
1,984,769	+		Pf6N2E2_1678	0.45	+1.4
1,984,769	+		Pf6N2E2_1678	0.45	+1.7
1,984,769	+		Pf6N2E2_1678	0.45	+0.9
1,984,769	+		Pf6N2E2_1678	0.45	+0.2
1,984,770	-		Pf6N2E2_1678	0.45	+1.3
1,984,776	+		Pf6N2E2_1678	0.46	+2.6
1,984,776	+		Pf6N2E2_1678	0.46	+1.4
1,984,776	+		Pf6N2E2_1678	0.46	+1.6
1,984,776	+		Pf6N2E2_1678	0.46	+1.0
1,984,817	+		Pf6N2E2_1678	0.49	+1.4
1,984,817	+		Pf6N2E2_1678	0.49	+1.1
1,984,818	-		Pf6N2E2_1678	0.49	+1.2
1,984,891	+		Pf6N2E2_1678	0.55	+0.6
1,984,892	-		Pf6N2E2_1678	0.55	-0.1
1,984,892	-		Pf6N2E2_1678	0.55	+1.4
1,984,892	-		Pf6N2E2_1678	0.55	+0.7
1,984,892	-		Pf6N2E2_1678	0.55	+0.4
1,984,928	+		Pf6N2E2_1678	0.57	+2.8
1,984,932	+		Pf6N2E2_1678	0.58	+1.4
1,984,933	-		Pf6N2E2_1678	0.58	+1.7
1,985,162	+		Pf6N2E2_1678	0.76	+0.9
1,985,228	-		Pf6N2E2_1678	0.81	+0.7
1,985,304	+		Pf6N2E2_1678	0.87	+2.4
1,985,427	+				-0.6
1,985,462	+				+0.6
1,985,463	-				+0.3
1,985,463	-				+1.3
1,985,466	+				+0.6
1,985,466	+				+0.3
1,985,466	+				-0.3
1,985,466	+				+0.4
1,985,466	+				-1.7
1,985,467	-				+0.4
1,985,467	-				+1.2
1,985,467	-				+0.3
1,985,477	+				-0.1
1,985,477	+				-0.7
1,985,477	+				+0.7
1,985,477	+				+1.4
1,985,478	-				+0.3
1,985,478	-				-0.1
1,985,478	-				+2.4
1,985,478	-				+0.9
1,985,481	+				+0.7
1,985,481	+				+0.5
1,985,481	+				+0.4
1,985,481	+				+0.6
1,985,481	+				+0.3
1,985,481	+				+1.4
1,985,481	+				+0.9
1,985,481	+				+0.8
1,985,481	+				+0.9
1,985,481	+				+0.3
1,985,481	+				+0.5
1,985,481	+				+0.3
1,985,481	+				+1.2
1,985,481	+				+0.0
1,985,482	-				+0.6
1,985,482	-				+0.3
1,985,524	-				+1.0
1,985,627	+				+0.5
1,985,627	+				-2.3
1,985,627	+				+0.7
1,985,627	+				+0.5
1,985,628	-				+0.4
1,985,768	+		Pf6N2E2_1679	0.20	+0.1
1,985,769	-		Pf6N2E2_1679	0.20	+0.0
1,985,771	+		Pf6N2E2_1679	0.20	+0.4
1,985,771	+		Pf6N2E2_1679	0.20	+0.8
1,985,771	+		Pf6N2E2_1679	0.20	+1.1
1,985,771	+		Pf6N2E2_1679	0.20	+1.9
1,985,826	-		Pf6N2E2_1679	0.27	+1.2
1,985,826	-		Pf6N2E2_1679	0.27	+0.8
1,985,871	-		Pf6N2E2_1679	0.33	-0.9
1,985,940	+		Pf6N2E2_1679	0.42	+1.4
1,985,940	+		Pf6N2E2_1679	0.42	+0.4
1,985,941	-		Pf6N2E2_1679	0.42	+0.5
1,986,054	+		Pf6N2E2_1679	0.57	+1.4
1,986,054	+		Pf6N2E2_1679	0.57	-0.4
1,986,054	+		Pf6N2E2_1679	0.57	+1.9
1,986,055	-		Pf6N2E2_1679	0.57	-0.1
1,986,185	+		Pf6N2E2_1679	0.73	-0.0
1,986,185	+		Pf6N2E2_1679	0.73	+1.4
1,986,185	+		Pf6N2E2_1679	0.73	+0.4
1,986,186	-		Pf6N2E2_1679	0.74	+0.2
1,986,186	-		Pf6N2E2_1679	0.74	+0.0