Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1018

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
1,187,430	+		Pf6N2E2_1017	0.44	+1.0
1,187,865	+				-0.8
1,187,865	+				+0.1
1,187,885	-				-0.1
1,187,921	+				-0.5
1,187,921	+				+0.2
1,187,921	+				+0.2
1,187,921	+				+0.1
1,187,921	+				-0.5
1,187,921	+				-0.5
1,187,921	+				+0.3
1,187,921	+				+1.5
1,187,922	-				+0.3
1,187,968	+				+1.0
1,187,969	-				+1.5
1,188,112	+				-0.4
1,188,113	-				+1.5
1,188,113	-				-0.4
1,188,135	+		Pf6N2E2_1018	0.10	+0.2
1,188,212	+		Pf6N2E2_1018	0.18	+0.6
1,188,212	+		Pf6N2E2_1018	0.18	+0.8
1,188,213	-		Pf6N2E2_1018	0.18	+1.2
1,188,213	-		Pf6N2E2_1018	0.18	+0.1
1,188,213	-		Pf6N2E2_1018	0.18	+0.5
1,188,404	-		Pf6N2E2_1018	0.36	+1.5
1,188,404	-		Pf6N2E2_1018	0.36	+0.5
1,188,404	-		Pf6N2E2_1018	0.36	+0.9
1,188,404	-		Pf6N2E2_1018	0.36	+1.4
1,188,406	+		Pf6N2E2_1018	0.37	-0.5
1,188,407	-		Pf6N2E2_1018	0.37	-0.9
1,188,407	-		Pf6N2E2_1018	0.37	-1.8
1,188,407	-		Pf6N2E2_1018	0.37	+0.3
1,188,407	-		Pf6N2E2_1018	0.37	-0.5
1,188,407	-		Pf6N2E2_1018	0.37	+1.5
1,188,434	-		Pf6N2E2_1018	0.39	+0.5
1,188,519	+		Pf6N2E2_1018	0.48	+3.1
1,188,520	-		Pf6N2E2_1018	0.48	+2.1
1,188,561	+		Pf6N2E2_1018	0.52	+0.3
1,188,561	+		Pf6N2E2_1018	0.52	+1.5
1,188,789	+		Pf6N2E2_1018	0.74	+1.3
1,188,789	+		Pf6N2E2_1018	0.74	+1.5
1,188,790	-		Pf6N2E2_1018	0.74	+0.7
1,188,968	+				+1.6
1,189,008	-				+2.5
1,189,008	-				+1.1
1,189,050	+				-0.9
1,189,131	-				+0.2
1,189,131	-				-0.5
1,189,167	-				+1.6
1,189,172	+				+0.1
1,189,225	-				+0.9
1,189,228	+				+0.1
1,189,229	-				-1.3
1,189,246	-				+1.7
1,189,253	+				+1.0
1,189,253	+				+0.5
1,189,254	-				+1.9
1,189,304	-				+0.4
1,189,382	+				+1.5
1,189,405	+				+0.5
1,189,418	+				-1.8
1,189,419	-				+1.5
1,189,419	-				+1.5
1,189,422	+				+0.5
1,189,422	+				+0.2
1,189,422	+				-0.3
1,189,422	+				-0.4
1,189,422	+				-0.2
1,189,423	-				-0.1
1,189,428	+				-1.6
1,189,428	+				-2.8
1,189,428	+				+2.5
1,189,428	+				+0.7
1,189,429	-				+2.5
1,189,478	-				-0.5
1,189,560	+				-1.1
1,189,639	+				-0.1
1,189,639	+				+0.7
1,189,639	+				-0.7
1,189,639	+				+1.1
1,189,639	+				-0.3
1,189,639	+				-0.8
1,189,640	-				+0.5
1,189,640	-				-1.3
1,189,640	-				-0.2
1,189,723	+				-0.2
1,189,806	+				-1.0
1,189,806	+				+1.0
1,189,907	+				+0.9
1,189,907	+				-0.9
1,189,907	+				-0.7
1,189,907	+				+1.1