Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04139 and SMc04138 are separated by 1 nucleotides SMc04138 and SMc04137 are separated by 22 nucleotides SMc04137 and SMc04136 overlap by 8 nucleotides
SMc04139: SMc04139 - oxidoreductase, at 132,586 to 133,659
SMc04139
SMc04138: SMc04138 - oxidoreductase, at 133,661 to 134,677
SMc04138
SMc04137: SMc04137 - ABC transporter permease, at 134,700 to 135,587
SMc04137
SMc04136: SMc04136 - ABC transporter permease, at 135,580 to 136,527
SMc04136
Position (kb) 133
134
135 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 132.674 kb on + strand at 132.881 kb on + strand, within SMc04139 at 132.882 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.096 kb on - strand, within SMc04139 at 133.172 kb on + strand, within SMc04139 at 133.173 kb on - strand, within SMc04139 at 133.173 kb on - strand, within SMc04139 at 133.176 kb on - strand at 133.176 kb on - strand, within SMc04139 at 133.217 kb on + strand, within SMc04139 at 133.218 kb on - strand, within SMc04139 at 133.277 kb on + strand, within SMc04139 at 133.596 kb on - strand at 134.017 kb on + strand, within SMc04138 at 134.017 kb on + strand, within SMc04138 at 134.018 kb on - strand, within SMc04138 at 134.160 kb on + strand, within SMc04138 at 134.311 kb on - strand, within SMc04138 at 134.536 kb on - strand, within SMc04138 at 134.628 kb on + strand at 134.628 kb on + strand at 134.629 kb on - strand at 134.866 kb on + strand, within SMc04137 at 134.866 kb on + strand, within SMc04137 at 134.867 kb on - strand, within SMc04137 at 134.887 kb on + strand, within SMc04137 at 135.043 kb on - strand, within SMc04137 at 135.158 kb on - strand, within SMc04137 at 135.158 kb on - strand, within SMc04137 at 135.182 kb on - strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.370 kb on + strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.467 kb on - strand, within SMc04137 at 135.590 kb on + strand at 135.590 kb on + strand at 135.591 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 132,674 + -0.1 132,881 + SMc04139 0.27 -0.3 132,882 - SMc04139 0.28 +0.3 133,096 - SMc04139 0.47 +0.1 133,096 - SMc04139 0.47 +0.1 133,096 - SMc04139 0.47 +0.5 133,096 - SMc04139 0.47 +0.7 133,172 + SMc04139 0.55 -2.8 133,173 - SMc04139 0.55 +2.1 133,173 - SMc04139 0.55 -0.2 133,176 - -1.3 133,176 - SMc04139 0.55 +0.3 133,217 + SMc04139 0.59 +2.4 133,218 - SMc04139 0.59 +1.4 133,277 + SMc04139 0.64 +0.3 133,596 - -0.2 134,017 + SMc04138 0.35 -1.4 134,017 + SMc04138 0.35 -0.4 134,018 - SMc04138 0.35 -1.4 134,160 + SMc04138 0.49 +3.2 134,311 - SMc04138 0.64 +1.5 134,536 - SMc04138 0.86 +5.0 134,628 + +0.4 134,628 + +1.6 134,629 - +1.4 134,866 + SMc04137 0.19 -1.9 134,866 + SMc04137 0.19 +0.3 134,867 - SMc04137 0.19 +0.4 134,887 + SMc04137 0.21 +0.9 135,043 - SMc04137 0.39 -0.7 135,158 - SMc04137 0.52 -1.0 135,158 - SMc04137 0.52 -0.7 135,182 - SMc04137 0.54 +0.4 135,256 + SMc04137 0.63 +2.8 135,256 + SMc04137 0.63 +1.2 135,256 + SMc04137 0.63 +0.7 135,256 + SMc04137 0.63 -2.2 135,256 + SMc04137 0.63 -2.0 135,256 + SMc04137 0.63 +0.1 135,370 + SMc04137 0.75 -3.9 135,371 - SMc04137 0.76 +0.1 135,371 - SMc04137 0.76 +0.6 135,371 - SMc04137 0.76 -2.2 135,467 - SMc04137 0.86 +0.0 135,590 + -4.1 135,590 + +1.2 135,591 - -3.5
Or see this region's nucleotide sequence