Strain Fitness in Sinorhizobium meliloti 1021 around SMc03774

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03772 and SMc03773 are separated by 130 nucleotidesSMc03773 and SMc03774 overlap by 4 nucleotidesSMc03774 and SMc03775 are separated by 57 nucleotides SMc03772: SMc03772 - 50S ribosomal protein L27, at 3,439,393 to 3,439,662 SMc03772 SMc03773: SMc03773 - hypothetical protein, at 3,439,793 to 3,440,425 SMc03773 SMc03774: SMc03774 - hypothetical protein, at 3,440,422 to 3,441,009 SMc03774 SMc03775: SMc03775 - GTPase ObgE, at 3,441,067 to 3,442,197 SMc03775 Position (kb) 3440 3441 3442Strain fitness (log2 ratio) -2 -1 0 1 2at 3439.996 kb on + strand, within SMc03773at 3439.996 kb on + strand, within SMc03773at 3439.996 kb on + strand, within SMc03773at 3439.997 kb on - strand, within SMc03773at 3439.997 kb on - strand, within SMc03773at 3440.061 kb on - strand, within SMc03773at 3440.148 kb on - strand, within SMc03773at 3440.181 kb on - strand, within SMc03773at 3440.369 kb on + strandat 3440.400 kb on + strandat 3440.649 kb on + strand, within SMc03774at 3440.767 kb on + strand, within SMc03774at 3440.768 kb on - strand, within SMc03774at 3440.933 kb on - strand, within SMc03774at 3441.016 kb on - strandat 3441.090 kb on + strandat 3441.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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3,439,996 + SMc03773 0.32 -1.5
3,439,996 + SMc03773 0.32 +0.9
3,439,996 + SMc03773 0.32 +1.2
3,439,997 - SMc03773 0.32 -0.7
3,439,997 - SMc03773 0.32 +0.2
3,440,061 - SMc03773 0.42 +0.2
3,440,148 - SMc03773 0.56 -0.0
3,440,181 - SMc03773 0.61 -1.1
3,440,369 + -1.8
3,440,400 + +0.6
3,440,649 + SMc03774 0.39 -0.8
3,440,767 + SMc03774 0.59 +1.6
3,440,768 - SMc03774 0.59 -1.3
3,440,933 - SMc03774 0.87 +2.5
3,441,016 - +0.5
3,441,090 + +1.0
3,441,171 + +0.1

Or see this region's nucleotide sequence