Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02873 and SMc02874 are separated by 55 nucleotides SMc02874 and SMc02875 are separated by 199 nucleotides
SMc02873: SMc02873 - N-Acetyl-D-glucosamine ABC transport system, periplasmic substrate-binding component <small>(from data)</small>, at 228,920 to 230,179
SMc02873
SMc02874: SMc02874 - N-acetylmuramic acid 6-phosphate etherase, at 230,235 to 231,131
SMc02874
SMc02875: SMc02875 - N-acetylglucosamine kinase (EC 2.7.1.59) <small>(from data)</small>, at 231,331 to 232,215
SMc02875
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 229.294 kb on + strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.295 kb on - strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.296 kb on + strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.297 kb on - strand, within SMc02873 at 229.441 kb on - strand, within SMc02873 at 229.471 kb on - strand, within SMc02873 at 229.575 kb on + strand, within SMc02873 at 229.575 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.650 kb on + strand, within SMc02873 at 229.651 kb on - strand, within SMc02873 at 229.651 kb on - strand, within SMc02873 at 229.651 kb on - strand, within SMc02873 at 229.747 kb on - strand, within SMc02873 at 229.887 kb on + strand, within SMc02873 at 229.972 kb on + strand, within SMc02873 at 230.001 kb on - strand, within SMc02873 at 230.196 kb on - strand at 230.196 kb on - strand at 230.196 kb on - strand at 230.229 kb on + strand at 230.302 kb on + strand at 230.403 kb on + strand, within SMc02874 at 230.404 kb on - strand, within SMc02874 at 230.702 kb on - strand, within SMc02874 at 230.800 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.869 kb on - strand, within SMc02874 at 230.869 kb on - strand, within SMc02874 at 230.875 kb on + strand, within SMc02874 at 231.250 kb on + strand at 231.386 kb on + strand at 231.438 kb on + strand, within SMc02875 at 231.445 kb on - strand, within SMc02875 at 231.473 kb on + strand, within SMc02875 at 231.586 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.707 kb on - strand, within SMc02875 at 231.707 kb on - strand, within SMc02875 at 231.736 kb on + strand, within SMc02875 at 231.737 kb on - strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.834 kb on - strand, within SMc02875
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 229,294 + SMc02873 0.30 +0.2 229,295 - SMc02873 0.30 -0.2 229,295 - SMc02873 0.30 +1.7 229,295 - SMc02873 0.30 -2.3 229,296 + SMc02873 0.30 -3.6 229,296 + SMc02873 0.30 +0.1 229,296 + SMc02873 0.30 +2.1 229,296 + SMc02873 0.30 -0.0 229,296 + SMc02873 0.30 -1.7 229,297 - SMc02873 0.30 +0.1 229,297 - SMc02873 0.30 -3.7 229,297 - SMc02873 0.30 +2.1 229,297 - SMc02873 0.30 +0.3 229,441 - SMc02873 0.41 -0.6 229,471 - SMc02873 0.44 -0.3 229,575 + SMc02873 0.52 +0.5 229,575 + SMc02873 0.52 -1.1 229,650 + SMc02873 0.58 +0.9 229,650 + SMc02873 0.58 -0.8 229,650 + SMc02873 0.58 +0.3 229,650 + SMc02873 0.58 -0.8 229,650 + SMc02873 0.58 +1.5 229,651 - SMc02873 0.58 -0.8 229,651 - SMc02873 0.58 -0.9 229,651 - SMc02873 0.58 +0.1 229,747 - SMc02873 0.66 -1.8 229,887 + SMc02873 0.77 -0.1 229,972 + SMc02873 0.83 +0.3 230,001 - SMc02873 0.86 +5.2 230,196 - +0.1 230,196 - +2.0 230,196 - -2.2 230,229 + -0.4 230,302 + +0.7 230,403 + SMc02874 0.19 -0.1 230,404 - SMc02874 0.19 -3.3 230,702 - SMc02874 0.52 -1.4 230,800 + SMc02874 0.63 -1.1 230,868 + SMc02874 0.71 -0.3 230,868 + SMc02874 0.71 +0.2 230,868 + SMc02874 0.71 -0.9 230,869 - SMc02874 0.71 -1.2 230,869 - SMc02874 0.71 -0.2 230,875 + SMc02874 0.71 +0.4 231,250 + -3.2 231,386 + -3.5 231,438 + SMc02875 0.12 +1.2 231,445 - SMc02875 0.13 -1.7 231,473 + SMc02875 0.16 +1.7 231,586 + SMc02875 0.29 -0.2 231,706 + SMc02875 0.42 -0.9 231,706 + SMc02875 0.42 -0.3 231,706 + SMc02875 0.42 +0.0 231,707 - SMc02875 0.42 -3.6 231,707 - SMc02875 0.42 -1.5 231,736 + SMc02875 0.46 +1.9 231,737 - SMc02875 0.46 +0.7 231,833 + SMc02875 0.57 -2.0 231,833 + SMc02875 0.57 -0.7 231,833 + SMc02875 0.57 -0.7 231,833 + SMc02875 0.57 -0.0 231,833 + SMc02875 0.57 +0.2 231,834 - SMc02875 0.57 -0.7
Or see this region's nucleotide sequence