Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02232 and SMc02234 overlap by 1 nucleotides SMc02234 and SMc02235 are separated by 98 nucleotides SMc02235 and SMc02236 are separated by 119 nucleotides
SMc02232: SMc02232 - hypothetical protein, at 597,695 to 598,621
SMc02232
SMc02234: SMc02234 - hypothetical protein, at 598,621 to 599,424
SMc02234
SMc02235: SMc02235 - transcriptional regulator, at 599,523 to 599,759
SMc02235
SMc02236: SMc02236 - DNA repair nuclease, ligase-associated (TIGR04123) <small>(from data)</small>, at 599,879 to 600,607
SMc02236
Position (kb) 598
599
600 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 597.705 kb on - strand at 597.831 kb on - strand, within SMc02232 at 597.932 kb on - strand, within SMc02232 at 598.047 kb on - strand, within SMc02232 at 598.054 kb on - strand, within SMc02232 at 598.311 kb on - strand, within SMc02232 at 598.589 kb on + strand at 598.599 kb on + strand at 598.848 kb on + strand, within SMc02234 at 598.927 kb on - strand, within SMc02234 at 599.138 kb on - strand, within SMc02234 at 599.243 kb on - strand, within SMc02234 at 599.323 kb on - strand, within SMc02234 at 599.354 kb on - strand at 599.568 kb on + strand, within SMc02235 at 599.568 kb on + strand, within SMc02235 at 599.568 kb on + strand, within SMc02235 at 599.569 kb on - strand, within SMc02235 at 599.569 kb on - strand, within SMc02235 at 599.569 kb on - strand, within SMc02235 at 599.616 kb on + strand, within SMc02235 at 599.617 kb on - strand, within SMc02235 at 599.617 kb on - strand, within SMc02235 at 599.634 kb on + strand, within SMc02235 at 599.634 kb on + strand, within SMc02235 at 599.635 kb on - strand, within SMc02235 at 599.656 kb on - strand, within SMc02235 at 599.656 kb on - strand, within SMc02235 at 599.757 kb on + strand at 599.758 kb on - strand at 599.825 kb on + strand at 599.825 kb on + strand at 599.826 kb on - strand at 599.850 kb on + strand at 599.910 kb on + strand at 599.911 kb on - strand at 599.911 kb on - strand at 600.400 kb on + strand, within SMc02236 at 600.400 kb on + strand, within SMc02236 at 600.400 kb on + strand, within SMc02236 at 600.401 kb on - strand, within SMc02236 at 600.405 kb on + strand, within SMc02236 at 600.405 kb on + strand, within SMc02236 at 600.405 kb on + strand, within SMc02236
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 597,705 - -1.8 597,831 - SMc02232 0.15 -2.3 597,932 - SMc02232 0.26 -2.8 598,047 - SMc02232 0.38 -2.5 598,054 - SMc02232 0.39 -4.5 598,311 - SMc02232 0.66 +1.6 598,589 + -0.6 598,599 + -0.3 598,848 + SMc02234 0.28 -0.4 598,927 - SMc02234 0.38 -3.0 599,138 - SMc02234 0.64 -1.2 599,243 - SMc02234 0.77 -2.2 599,323 - SMc02234 0.87 +1.6 599,354 - -2.1 599,568 + SMc02235 0.19 +0.6 599,568 + SMc02235 0.19 +1.9 599,568 + SMc02235 0.19 +2.2 599,569 - SMc02235 0.19 -0.4 599,569 - SMc02235 0.19 +1.1 599,569 - SMc02235 0.19 +2.6 599,616 + SMc02235 0.39 +1.2 599,617 - SMc02235 0.40 -1.1 599,617 - SMc02235 0.40 +1.9 599,634 + SMc02235 0.47 -0.9 599,634 + SMc02235 0.47 -1.0 599,635 - SMc02235 0.47 -0.9 599,656 - SMc02235 0.56 -0.4 599,656 - SMc02235 0.56 -3.0 599,757 + -1.5 599,758 - -2.4 599,825 + +0.1 599,825 + -3.3 599,826 - +0.6 599,850 + -0.8 599,910 + -1.5 599,911 - +0.7 599,911 - -0.4 600,400 + SMc02236 0.71 +0.0 600,400 + SMc02236 0.71 +1.6 600,400 + SMc02236 0.71 +0.9 600,401 - SMc02236 0.72 -1.8 600,405 + SMc02236 0.72 +0.3 600,405 + SMc02236 0.72 -1.0 600,405 + SMc02236 0.72 +0.2
Or see this region's nucleotide sequence