Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02224 and SMc02225 are separated by 101 nucleotides SMc02225 and SMc02226 are separated by 124 nucleotides SMc02226 and SMc02227 are separated by 90 nucleotides
SMc02224: SMc02224 - calcium/proton antiporter transmembrane protein, at 585,497 to 586,582
SMc02224
SMc02225: SMc02225 - hypothetical protein, at 586,684 to 587,211
SMc02225
SMc02226: SMc02226 - hypothetical protein, at 587,336 to 587,809
SMc02226
SMc02227: SMc02227 - fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase, at 587,900 to 590,113
SMc02227
Position (kb) 586
587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 585.800 kb on - strand, within SMc02224 at 585.806 kb on + strand, within SMc02224 at 585.806 kb on + strand, within SMc02224 at 585.806 kb on + strand, within SMc02224 at 585.807 kb on - strand, within SMc02224 at 585.807 kb on - strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.887 kb on + strand, within SMc02224 at 585.889 kb on + strand, within SMc02224 at 585.912 kb on - strand, within SMc02224 at 585.986 kb on + strand, within SMc02224 at 585.987 kb on - strand, within SMc02224 at 586.025 kb on + strand, within SMc02224 at 586.025 kb on + strand, within SMc02224 at 586.025 kb on + strand, within SMc02224 at 586.026 kb on - strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.027 kb on + strand, within SMc02224 at 586.028 kb on - strand, within SMc02224 at 586.064 kb on + strand, within SMc02224 at 586.076 kb on + strand, within SMc02224 at 586.409 kb on + strand, within SMc02224 at 586.409 kb on + strand, within SMc02224 at 586.410 kb on - strand, within SMc02224 at 586.410 kb on - strand, within SMc02224 at 586.410 kb on - strand, within SMc02224 at 586.411 kb on + strand, within SMc02224 at 586.597 kb on - strand at 586.697 kb on - strand at 586.697 kb on - strand at 586.749 kb on - strand, within SMc02225 at 586.971 kb on + strand, within SMc02225 at 586.972 kb on - strand, within SMc02225 at 586.973 kb on + strand, within SMc02225 at 586.973 kb on + strand, within SMc02225 at 586.974 kb on - strand, within SMc02225 at 587.227 kb on - strand at 587.482 kb on + strand, within SMc02226 at 587.483 kb on - strand, within SMc02226 at 587.547 kb on - strand, within SMc02226 at 587.547 kb on - strand, within SMc02226 at 587.564 kb on + strand, within SMc02226 at 587.603 kb on + strand, within SMc02226 at 587.603 kb on + strand, within SMc02226 at 587.604 kb on - strand, within SMc02226 at 587.605 kb on + strand, within SMc02226 at 587.944 kb on - strand at 587.944 kb on - strand at 588.066 kb on + strand at 588.066 kb on + strand at 588.067 kb on - strand at 588.067 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 585,800 - SMc02224 0.28 +0.5 585,806 + SMc02224 0.28 +0.8 585,806 + SMc02224 0.28 -1.0 585,806 + SMc02224 0.28 -0.5 585,807 - SMc02224 0.29 -0.4 585,807 - SMc02224 0.29 +1.1 585,887 + SMc02224 0.36 -0.7 585,887 + SMc02224 0.36 +0.5 585,887 + SMc02224 0.36 +0.2 585,887 + SMc02224 0.36 -1.1 585,889 + SMc02224 0.36 +0.3 585,912 - SMc02224 0.38 +0.1 585,986 + SMc02224 0.45 +0.3 585,987 - SMc02224 0.45 +0.7 586,025 + SMc02224 0.49 +0.6 586,025 + SMc02224 0.49 -0.0 586,025 + SMc02224 0.49 +1.6 586,026 - SMc02224 0.49 +1.2 586,027 + SMc02224 0.49 +0.2 586,027 + SMc02224 0.49 -2.9 586,027 + SMc02224 0.49 -1.9 586,027 + SMc02224 0.49 -2.2 586,028 - SMc02224 0.49 +0.7 586,064 + SMc02224 0.52 -0.4 586,076 + SMc02224 0.53 -0.5 586,409 + SMc02224 0.84 +0.0 586,409 + SMc02224 0.84 -0.3 586,410 - SMc02224 0.84 +0.5 586,410 - SMc02224 0.84 -0.5 586,410 - SMc02224 0.84 -0.1 586,411 + SMc02224 0.84 +0.5 586,597 - -0.5 586,697 - +2.2 586,697 - +3.0 586,749 - SMc02225 0.12 +0.0 586,971 + SMc02225 0.54 -0.8 586,972 - SMc02225 0.55 -1.1 586,973 + SMc02225 0.55 +0.0 586,973 + SMc02225 0.55 -2.5 586,974 - SMc02225 0.55 -0.5 587,227 - +0.5 587,482 + SMc02226 0.31 +0.2 587,483 - SMc02226 0.31 +1.6 587,547 - SMc02226 0.45 +0.4 587,547 - SMc02226 0.45 +1.8 587,564 + SMc02226 0.48 -0.1 587,603 + SMc02226 0.56 -0.3 587,603 + SMc02226 0.56 -0.0 587,604 - SMc02226 0.57 -0.8 587,605 + SMc02226 0.57 +2.1 587,944 - -1.1 587,944 - +0.4 588,066 + -0.6 588,066 + +0.9 588,067 - -1.9 588,067 - -2.7
Or see this region's nucleotide sequence