Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02162 and SMc02161 are separated by 337 nucleotides SMc02161 and SMc02160 are separated by 59 nucleotides
SMc02162: SMc02162 - long-chain-fatty-acid--CoA ligase, at 532,686 to 534,386
SMc02162
SMc02161: SMc02161 - transport transmembrane protein, at 534,724 to 535,959
SMc02161
SMc02160: SMc02160 - ABC transporter permease, at 536,019 to 537,329
SMc02160
Position (kb) 534
535
536 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 533.955 kb on - strand, within SMc02162 at 534.029 kb on + strand, within SMc02162 at 534.029 kb on + strand, within SMc02162 at 534.031 kb on + strand, within SMc02162 at 534.031 kb on + strand, within SMc02162 at 534.032 kb on - strand, within SMc02162 at 534.079 kb on + strand, within SMc02162 at 534.080 kb on - strand, within SMc02162 at 534.185 kb on + strand, within SMc02162 at 534.244 kb on + strand at 534.245 kb on - strand at 534.286 kb on + strand at 534.286 kb on + strand at 534.478 kb on + strand at 534.479 kb on - strand at 534.479 kb on - strand at 534.511 kb on - strand at 534.544 kb on + strand at 534.544 kb on + strand at 534.544 kb on + strand at 534.544 kb on + strand at 534.544 kb on + strand at 534.545 kb on - strand at 534.545 kb on - strand at 534.545 kb on - strand at 534.612 kb on - strand at 534.612 kb on - strand at 534.613 kb on + strand at 534.626 kb on + strand at 534.628 kb on + strand at 534.670 kb on - strand at 534.766 kb on - strand at 534.766 kb on - strand at 534.941 kb on - strand, within SMc02161 at 535.419 kb on + strand, within SMc02161 at 535.420 kb on - strand, within SMc02161 at 535.463 kb on - strand, within SMc02161 at 535.557 kb on + strand, within SMc02161 at 535.558 kb on - strand, within SMc02161 at 535.633 kb on + strand, within SMc02161 at 535.633 kb on + strand, within SMc02161 at 535.634 kb on - strand, within SMc02161 at 535.646 kb on - strand, within SMc02161 at 535.892 kb on + strand at 535.893 kb on - strand at 535.952 kb on + strand at 536.010 kb on + strand at 536.011 kb on - strand at 536.037 kb on - strand at 536.126 kb on + strand at 536.126 kb on + strand at 536.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 533,955 - SMc02162 0.75 +0.9 534,029 + SMc02162 0.79 +2.0 534,029 + SMc02162 0.79 +0.5 534,031 + SMc02162 0.79 +4.8 534,031 + SMc02162 0.79 +0.0 534,032 - SMc02162 0.79 +0.9 534,079 + SMc02162 0.82 -0.1 534,080 - SMc02162 0.82 +0.8 534,185 + SMc02162 0.88 +1.2 534,244 + +2.1 534,245 - +3.9 534,286 + +1.2 534,286 + +0.0 534,478 + -0.3 534,479 - +1.5 534,479 - -0.6 534,511 - -2.6 534,544 + +0.8 534,544 + -0.3 534,544 + +4.2 534,544 + +1.6 534,544 + +1.9 534,545 - +0.4 534,545 - -0.5 534,545 - +0.7 534,612 - -3.8 534,612 - +1.2 534,613 + +0.0 534,626 + -0.9 534,628 + -0.2 534,670 - -1.2 534,766 - -0.2 534,766 - -2.1 534,941 - SMc02161 0.18 -1.9 535,419 + SMc02161 0.56 +0.2 535,420 - SMc02161 0.56 +0.3 535,463 - SMc02161 0.60 -0.5 535,557 + SMc02161 0.67 +0.4 535,558 - SMc02161 0.67 +0.2 535,633 + SMc02161 0.74 -1.6 535,633 + SMc02161 0.74 +3.8 535,634 - SMc02161 0.74 +0.3 535,646 - SMc02161 0.75 -0.3 535,892 + -0.0 535,893 - -1.0 535,952 + +1.8 536,010 + -0.2 536,011 - +1.2 536,037 - +0.1 536,126 + -0.4 536,126 + +0.1 536,126 + -3.1
Or see this region's nucleotide sequence