Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02161 and SMc02160 are separated by 59 nucleotides SMc02160 and SMc02159 are separated by 95 nucleotides SMc02159 and SMc02158 overlap by 4 nucleotides
SMc02161: SMc02161 - transport transmembrane protein, at 534,724 to 535,959
SMc02161
SMc02160: SMc02160 - ABC transporter permease, at 536,019 to 537,329
SMc02160
SMc02159: SMc02159 - hypothetical protein, at 537,425 to 538,090
SMc02159
SMc02158: SMc02158 - acyltransferase, at 538,087 to 538,698
SMc02158
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 535.419 kb on + strand, within SMc02161 at 535.420 kb on - strand, within SMc02161 at 535.463 kb on - strand, within SMc02161 at 535.557 kb on + strand, within SMc02161 at 535.558 kb on - strand, within SMc02161 at 535.633 kb on + strand, within SMc02161 at 535.633 kb on + strand, within SMc02161 at 535.634 kb on - strand, within SMc02161 at 535.646 kb on - strand, within SMc02161 at 535.892 kb on + strand at 535.893 kb on - strand at 535.952 kb on + strand at 536.010 kb on + strand at 536.011 kb on - strand at 536.037 kb on - strand at 536.126 kb on + strand at 536.126 kb on + strand at 536.126 kb on + strand at 537.314 kb on + strand at 537.734 kb on + strand, within SMc02159 at 537.735 kb on - strand, within SMc02159 at 537.788 kb on + strand, within SMc02159 at 537.788 kb on + strand, within SMc02159 at 537.848 kb on + strand, within SMc02159 at 537.848 kb on + strand, within SMc02159 at 537.849 kb on - strand, within SMc02159 at 537.992 kb on + strand, within SMc02159 at 538.180 kb on + strand, within SMc02158 at 538.181 kb on - strand, within SMc02158 at 538.279 kb on + strand, within SMc02158 at 538.279 kb on + strand, within SMc02158 at 538.308 kb on + strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.309 kb on - strand, within SMc02158
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 535,419 + SMc02161 0.56 +0.2 535,420 - SMc02161 0.56 +0.3 535,463 - SMc02161 0.60 -0.5 535,557 + SMc02161 0.67 +0.4 535,558 - SMc02161 0.67 +0.2 535,633 + SMc02161 0.74 -1.6 535,633 + SMc02161 0.74 +3.8 535,634 - SMc02161 0.74 +0.3 535,646 - SMc02161 0.75 -0.3 535,892 + -0.0 535,893 - -1.0 535,952 + +1.8 536,010 + -0.2 536,011 - +1.2 536,037 - +0.1 536,126 + -0.4 536,126 + +0.1 536,126 + -3.1 537,314 + +1.0 537,734 + SMc02159 0.46 -1.9 537,735 - SMc02159 0.47 +2.8 537,788 + SMc02159 0.55 +0.8 537,788 + SMc02159 0.55 +0.2 537,848 + SMc02159 0.64 +0.7 537,848 + SMc02159 0.64 +1.6 537,849 - SMc02159 0.64 -1.0 537,992 + SMc02159 0.85 -0.1 538,180 + SMc02158 0.15 -1.4 538,181 - SMc02158 0.15 +2.6 538,279 + SMc02158 0.31 -0.6 538,279 + SMc02158 0.31 +0.2 538,308 + SMc02158 0.36 +0.4 538,309 - SMc02158 0.36 -1.3 538,309 - SMc02158 0.36 +1.0 538,309 - SMc02158 0.36 -0.0
Or see this region's nucleotide sequence