Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01107 and SMc01106 are separated by 48 nucleotides SMc01106 and SMc01105 are separated by 164 nucleotides SMc01105 and SMc01104 are separated by 94 nucleotides
SMc01107: SMc01107 - hypothetical protein, at 448,527 to 448,784
SMc01107
SMc01106: SMc01106 - small heat shock protein, at 448,833 to 449,264
SMc01106
SMc01105: SMc01105 - uridine nucleosidase (EC 3.2.2.3) <small>(from data)</small>, at 449,429 to 450,373
SMc01105
SMc01104: SMc01104 - chemoreceptor methyl-accepting chemotaxis transmembrane protein, at 450,468 to 452,834
SMc01104
Position (kb) 449
450
451 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 448.605 kb on - strand, within SMc01107 at 448.635 kb on + strand, within SMc01107 at 448.635 kb on + strand, within SMc01107 at 448.635 kb on + strand, within SMc01107 at 448.635 kb on + strand, within SMc01107 at 448.636 kb on - strand, within SMc01107 at 448.636 kb on - strand, within SMc01107 at 448.636 kb on - strand, within SMc01107 at 448.636 kb on - strand, within SMc01107 at 448.711 kb on + strand, within SMc01107 at 448.712 kb on - strand, within SMc01107 at 448.712 kb on - strand, within SMc01107 at 448.834 kb on + strand at 448.864 kb on - strand at 448.869 kb on - strand at 449.000 kb on - strand, within SMc01106 at 449.000 kb on - strand, within SMc01106 at 449.154 kb on + strand, within SMc01106 at 449.154 kb on + strand, within SMc01106 at 449.154 kb on + strand, within SMc01106 at 449.154 kb on - strand, within SMc01106 at 449.155 kb on - strand, within SMc01106 at 449.156 kb on + strand, within SMc01106 at 449.156 kb on + strand, within SMc01106 at 449.157 kb on - strand, within SMc01106 at 449.157 kb on - strand, within SMc01106 at 449.161 kb on + strand, within SMc01106 at 449.162 kb on - strand, within SMc01106 at 449.162 kb on - strand, within SMc01106 at 449.243 kb on + strand at 449.253 kb on + strand at 449.329 kb on + strand at 449.330 kb on - strand at 449.387 kb on - strand at 449.920 kb on - strand, within SMc01105 at 449.945 kb on + strand, within SMc01105 at 449.946 kb on - strand, within SMc01105 at 449.946 kb on - strand, within SMc01105 at 449.946 kb on - strand, within SMc01105 at 449.946 kb on - strand, within SMc01105 at 450.136 kb on - strand, within SMc01105 at 450.179 kb on + strand, within SMc01105 at 450.179 kb on + strand, within SMc01105 at 450.180 kb on - strand, within SMc01105 at 450.180 kb on - strand, within SMc01105 at 450.181 kb on + strand, within SMc01105 at 450.182 kb on - strand, within SMc01105 at 450.182 kb on - strand, within SMc01105 at 450.257 kb on - strand, within SMc01105 at 450.257 kb on - strand, within SMc01105 at 450.547 kb on + strand at 450.950 kb on + strand, within SMc01104 at 450.950 kb on + strand, within SMc01104 at 450.951 kb on - strand, within SMc01104 at 450.951 kb on - strand, within SMc01104 at 450.951 kb on - strand, within SMc01104 at 450.951 kb on - strand, within SMc01104 at 451.158 kb on - strand, within SMc01104
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 448,605 - SMc01107 0.30 -0.6 448,635 + SMc01107 0.42 +0.2 448,635 + SMc01107 0.42 -3.9 448,635 + SMc01107 0.42 -0.4 448,635 + SMc01107 0.42 +0.7 448,636 - SMc01107 0.42 +0.3 448,636 - SMc01107 0.42 +0.2 448,636 - SMc01107 0.42 -0.8 448,636 - SMc01107 0.42 +1.4 448,711 + SMc01107 0.71 -0.0 448,712 - SMc01107 0.72 -0.1 448,712 - SMc01107 0.72 -0.2 448,834 + +1.6 448,864 - -0.3 448,869 - +0.1 449,000 - SMc01106 0.39 +0.1 449,000 - SMc01106 0.39 -1.5 449,154 + SMc01106 0.74 -0.5 449,154 + SMc01106 0.74 +0.1 449,154 + SMc01106 0.74 -3.1 449,154 - SMc01106 0.74 +2.1 449,155 - SMc01106 0.75 +0.9 449,156 + SMc01106 0.75 +0.6 449,156 + SMc01106 0.75 -1.2 449,157 - SMc01106 0.75 -1.0 449,157 - SMc01106 0.75 -0.3 449,161 + SMc01106 0.76 -0.4 449,162 - SMc01106 0.76 +0.0 449,162 - SMc01106 0.76 -0.4 449,243 + +0.6 449,253 + -1.7 449,329 + -0.4 449,330 - +0.2 449,387 - -1.6 449,920 - SMc01105 0.52 +0.7 449,945 + SMc01105 0.55 -0.3 449,946 - SMc01105 0.55 -0.6 449,946 - SMc01105 0.55 -0.2 449,946 - SMc01105 0.55 +1.4 449,946 - SMc01105 0.55 +0.9 450,136 - SMc01105 0.75 -1.7 450,179 + SMc01105 0.79 -0.7 450,179 + SMc01105 0.79 -2.2 450,180 - SMc01105 0.79 -2.8 450,180 - SMc01105 0.79 -0.2 450,181 + SMc01105 0.80 -2.6 450,182 - SMc01105 0.80 -1.4 450,182 - SMc01105 0.80 -0.6 450,257 - SMc01105 0.88 +0.0 450,257 - SMc01105 0.88 -0.7 450,547 + -0.4 450,950 + SMc01104 0.20 -0.9 450,950 + SMc01104 0.20 -0.0 450,951 - SMc01104 0.20 -0.2 450,951 - SMc01104 0.20 -0.6 450,951 - SMc01104 0.20 -1.4 450,951 - SMc01104 0.20 +0.9 451,158 - SMc01104 0.29 -0.5
Or see this region's nucleotide sequence