Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00982 and SMc00981 are separated by 2 nucleotides SMc00981 and SMc00980 are separated by 1 nucleotides
SMc00982: SMc00982 - dioxygenase, at 955,077 to 956,321
SMc00982
SMc00981: SMc00981 - ferredoxin protein, at 956,324 to 957,418
SMc00981
SMc00980: SMc00980 - hypothetical protein, at 957,420 to 958,445
SMc00980
Position (kb) 956
957
958 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 955.411 kb on - strand, within SMc00982 at 955.411 kb on - strand, within SMc00982 at 955.680 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.887 kb on + strand, within SMc00982 at 955.888 kb on - strand, within SMc00982 at 955.889 kb on + strand, within SMc00982 at 956.103 kb on + strand, within SMc00982 at 956.214 kb on + strand at 956.534 kb on + strand, within SMc00981 at 956.534 kb on + strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.536 kb on + strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.705 kb on + strand, within SMc00981 at 957.068 kb on + strand, within SMc00981 at 957.365 kb on + strand at 957.365 kb on + strand at 957.534 kb on + strand, within SMc00980 at 957.705 kb on + strand, within SMc00980 at 957.706 kb on - strand, within SMc00980 at 957.706 kb on - strand, within SMc00980 at 957.819 kb on - strand, within SMc00980 at 957.844 kb on + strand, within SMc00980 at 957.845 kb on - strand, within SMc00980 at 957.922 kb on + strand, within SMc00980 at 957.922 kb on + strand, within SMc00980 at 957.923 kb on - strand, within SMc00980 at 957.994 kb on + strand, within SMc00980 at 957.994 kb on + strand, within SMc00980 at 957.995 kb on - strand, within SMc00980 at 958.057 kb on + strand, within SMc00980 at 958.112 kb on - strand, within SMc00980 at 958.163 kb on - strand, within SMc00980 at 958.163 kb on - strand, within SMc00980 at 958.163 kb on - strand, within SMc00980 at 958.218 kb on - strand, within SMc00980 at 958.238 kb on + strand, within SMc00980 at 958.239 kb on - strand, within SMc00980 at 958.339 kb on + strand, within SMc00980 at 958.339 kb on + strand, within SMc00980 at 958.339 kb on + strand, within SMc00980 at 958.340 kb on - strand, within SMc00980
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 955,411 - SMc00982 0.27 -2.7 955,411 - SMc00982 0.27 -3.8 955,680 + SMc00982 0.48 -3.3 955,715 + SMc00982 0.51 -2.9 955,715 + SMc00982 0.51 -2.0 955,715 + SMc00982 0.51 -1.0 955,715 + SMc00982 0.51 -1.4 955,887 + SMc00982 0.65 -4.0 955,888 - SMc00982 0.65 +1.6 955,889 + SMc00982 0.65 -2.2 956,103 + SMc00982 0.82 -1.7 956,214 + -1.6 956,534 + SMc00981 0.19 -2.9 956,534 + SMc00981 0.19 -2.4 956,535 - SMc00981 0.19 -3.4 956,535 - SMc00981 0.19 -3.6 956,535 - SMc00981 0.19 -1.9 956,536 + SMc00981 0.19 +0.0 956,537 - SMc00981 0.19 +0.0 956,537 - SMc00981 0.19 -3.7 956,537 - SMc00981 0.19 -2.5 956,705 + SMc00981 0.35 +0.3 957,068 + SMc00981 0.68 -3.6 957,365 + -1.2 957,365 + -1.9 957,534 + SMc00980 0.11 +1.4 957,705 + SMc00980 0.28 +1.3 957,706 - SMc00980 0.28 +4.6 957,706 - SMc00980 0.28 -0.1 957,819 - SMc00980 0.39 -0.7 957,844 + SMc00980 0.41 +1.2 957,845 - SMc00980 0.41 -1.7 957,922 + SMc00980 0.49 -1.6 957,922 + SMc00980 0.49 +0.4 957,923 - SMc00980 0.49 +0.8 957,994 + SMc00980 0.56 +0.7 957,994 + SMc00980 0.56 -2.0 957,995 - SMc00980 0.56 +0.6 958,057 + SMc00980 0.62 +0.0 958,112 - SMc00980 0.67 +0.2 958,163 - SMc00980 0.72 -0.0 958,163 - SMc00980 0.72 -0.1 958,163 - SMc00980 0.72 +0.2 958,218 - SMc00980 0.78 -1.8 958,238 + SMc00980 0.80 +1.7 958,239 - SMc00980 0.80 +0.9 958,339 + SMc00980 0.90 +0.0 958,339 + SMc00980 0.90 -1.1 958,339 + SMc00980 0.90 +0.5 958,340 - SMc00980 0.90 -3.7
Or see this region's nucleotide sequence