Strain Fitness in Sinorhizobium meliloti 1021 around SMc00909

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00910 and SMc00909 are separated by 13 nucleotidesSMc00909 and SMc00908 are separated by 282 nucleotides SMc00910: SMc00910 - hypothetical protein, at 872,554 to 873,402 SMc00910 SMc00909: SMc00909 - bifunctional riboflavin kinase/FMN adenylyltransferase, at 873,416 to 874,399 SMc00909 SMc00908: SMc00908 - isoleucyl-tRNA synthetase, at 874,682 to 877,591 SMc00908 Position (kb) 873 874 875Strain fitness (log2 ratio) -1 0 1 2at 872.782 kb on + strand, within SMc00910at 873.014 kb on + strand, within SMc00910at 873.060 kb on + strand, within SMc00910at 873.060 kb on + strand, within SMc00910at 873.060 kb on + strand, within SMc00910at 873.060 kb on + strand, within SMc00910at 873.060 kb on + strand, within SMc00910at 873.060 kb on + strand, within SMc00910at 873.060 kb on + strand, within SMc00910at 873.097 kb on + strand, within SMc00910at 873.097 kb on + strand, within SMc00910at 873.277 kb on + strand, within SMc00910at 873.277 kb on + strand, within SMc00910at 873.307 kb on + strand, within SMc00910at 873.307 kb on + strand, within SMc00910at 874.487 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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872,782 + SMc00910 0.27 -0.8
873,014 + SMc00910 0.54 +1.8
873,060 + SMc00910 0.60 +1.6
873,060 + SMc00910 0.60 +0.0
873,060 + SMc00910 0.60 +0.3
873,060 + SMc00910 0.60 +1.1
873,060 + SMc00910 0.60 +1.4
873,060 + SMc00910 0.60 +0.8
873,060 + SMc00910 0.60 +1.6
873,097 + SMc00910 0.64 -0.2
873,097 + SMc00910 0.64 -0.4
873,277 + SMc00910 0.85 -0.2
873,277 + SMc00910 0.85 -1.4
873,307 + SMc00910 0.89 +1.9
873,307 + SMc00910 0.89 +1.4
874,487 + -0.7

Or see this region's nucleotide sequence