Strain Fitness in Sinorhizobium meliloti 1021 around SMc00878

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00879 and SMc00878 are separated by 227 nucleotidesSMc00878 and SMc00877 are separated by 153 nucleotides SMc00879: SMc00879 - transcriptional regulator, at 907,157 to 908,011 SMc00879 SMc00878: SMc00878 - transcriptional regulator, at 908,239 to 908,979 SMc00878 SMc00877: SMc00877 - transcriptional regulator, at 909,133 to 909,966 SMc00877 Position (kb) 908 909Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 907.278 kb on + strand, within SMc00879at 907.278 kb on + strand, within SMc00879at 907.279 kb on - strand, within SMc00879at 907.374 kb on - strand, within SMc00879at 907.451 kb on + strand, within SMc00879at 907.524 kb on - strand, within SMc00879at 907.559 kb on - strand, within SMc00879at 907.559 kb on - strand, within SMc00879at 907.593 kb on - strand, within SMc00879at 907.725 kb on + strand, within SMc00879at 907.726 kb on - strand, within SMc00879at 907.856 kb on + strand, within SMc00879at 907.857 kb on - strand, within SMc00879at 907.857 kb on - strand, within SMc00879at 908.025 kb on + strandat 908.025 kb on - strandat 908.070 kb on - strandat 908.106 kb on + strandat 908.106 kb on + strandat 908.106 kb on + strandat 908.106 kb on + strandat 908.106 kb on + strandat 908.106 kb on + strandat 908.107 kb on - strandat 908.107 kb on - strandat 908.107 kb on - strandat 908.110 kb on + strandat 908.181 kb on + strandat 908.182 kb on - strandat 908.259 kb on + strandat 908.259 kb on + strandat 908.260 kb on - strandat 908.260 kb on - strandat 908.260 kb on - strandat 908.260 kb on - strandat 908.261 kb on + strandat 908.261 kb on + strandat 908.261 kb on + strandat 908.261 kb on + strandat 908.261 kb on + strandat 908.262 kb on - strandat 908.533 kb on + strand, within SMc00878at 908.533 kb on + strand, within SMc00878at 908.533 kb on + strand, within SMc00878at 908.588 kb on + strand, within SMc00878at 908.588 kb on + strand, within SMc00878at 908.588 kb on + strand, within SMc00878at 908.589 kb on - strand, within SMc00878at 908.589 kb on - strand, within SMc00878at 908.589 kb on - strand, within SMc00878at 908.589 kb on - strand, within SMc00878at 908.627 kb on - strand, within SMc00878at 908.627 kb on - strand, within SMc00878at 908.738 kb on + strand, within SMc00878at 908.738 kb on + strand, within SMc00878at 908.738 kb on + strand, within SMc00878at 908.738 kb on + strandat 908.738 kb on + strand, within SMc00878at 908.738 kb on + strand, within SMc00878at 908.739 kb on - strand, within SMc00878at 908.739 kb on - strand, within SMc00878at 908.739 kb on - strand, within SMc00878at 908.739 kb on - strand, within SMc00878at 908.739 kb on - strand, within SMc00878at 908.740 kb on + strand, within SMc00878at 908.741 kb on - strand, within SMc00878at 908.741 kb on - strand, within SMc00878at 908.879 kb on - strand, within SMc00878at 908.880 kb on + strand, within SMc00878at 908.880 kb on + strand, within SMc00878at 908.881 kb on - strand, within SMc00878at 908.893 kb on + strand, within SMc00878at 908.894 kb on - strand, within SMc00878at 908.957 kb on + strandat 908.957 kb on + strandat 908.958 kb on - strandat 908.997 kb on + strandat 908.997 kb on + strandat 908.998 kb on - strandat 908.998 kb on - strandat 909.182 kb on + strandat 909.209 kb on + strandat 909.243 kb on + strand, within SMc00877at 909.281 kb on + strand, within SMc00877at 909.281 kb on + strand, within SMc00877at 909.316 kb on + strand, within SMc00877at 909.387 kb on - strand, within SMc00877at 909.445 kb on + strand, within SMc00877at 909.445 kb on + strand, within SMc00877at 909.445 kb on + strand, within SMc00877at 909.445 kb on + strand, within SMc00877at 909.446 kb on - strand, within SMc00877at 909.571 kb on + strand, within SMc00877at 909.571 kb on + strand, within SMc00877at 909.571 kb on + strand, within SMc00877at 909.572 kb on - strand, within SMc00877at 909.599 kb on + strand, within SMc00877at 909.599 kb on + strand, within SMc00877at 909.614 kb on - strand, within SMc00877at 909.727 kb on + strand, within SMc00877at 909.727 kb on + strand, within SMc00877at 909.727 kb on + strand, within SMc00877at 909.727 kb on + strand, within SMc00877at 909.728 kb on - strand, within SMc00877at 909.847 kb on - strand, within SMc00877at 909.880 kb on + strand, within SMc00877at 909.880 kb on + strand, within SMc00877at 909.881 kb on - strand, within SMc00877at 909.955 kb on + strandat 909.955 kb on + strandat 909.955 kb on + strandat 909.956 kb on - strandat 909.957 kb on + strandat 909.965 kb on - strandat 909.977 kb on + strandat 909.977 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
remove
907,278 + SMc00879 0.14 -1.6
907,278 + SMc00879 0.14 +3.6
907,279 - SMc00879 0.14 +0.2
907,374 - SMc00879 0.25 -0.3
907,451 + SMc00879 0.34 +0.8
907,524 - SMc00879 0.43 +0.5
907,559 - SMc00879 0.47 +0.4
907,559 - SMc00879 0.47 -2.6
907,593 - SMc00879 0.51 -1.5
907,725 + SMc00879 0.66 +0.9
907,726 - SMc00879 0.67 +0.0
907,856 + SMc00879 0.82 +0.4
907,857 - SMc00879 0.82 +1.5
907,857 - SMc00879 0.82 +0.6
908,025 + +0.2
908,025 - -0.4
908,070 - -0.2
908,106 + -0.2
908,106 + +1.6
908,106 + +0.0
908,106 + +0.6
908,106 + -0.3
908,106 + +0.0
908,107 - -1.6
908,107 - -0.1
908,107 - +1.3
908,110 + +0.4
908,181 + +0.6
908,182 - -0.5
908,259 + +0.1
908,259 + -1.4
908,260 - +1.1
908,260 - -1.0
908,260 - +0.6
908,260 - -0.1
908,261 + -0.3
908,261 + -0.4
908,261 + +0.7
908,261 + -0.2
908,261 + +0.4
908,262 - +0.1
908,533 + SMc00878 0.40 +2.4
908,533 + SMc00878 0.40 -1.0
908,533 + SMc00878 0.40 +1.1
908,588 + SMc00878 0.47 -0.3
908,588 + SMc00878 0.47 -1.0
908,588 + SMc00878 0.47 -0.2
908,589 - SMc00878 0.47 +0.7
908,589 - SMc00878 0.47 -0.4
908,589 - SMc00878 0.47 +1.6
908,589 - SMc00878 0.47 -0.6
908,627 - SMc00878 0.52 +0.4
908,627 - SMc00878 0.52 -2.6
908,738 + SMc00878 0.67 -0.0
908,738 + SMc00878 0.67 -1.4
908,738 + SMc00878 0.67 +1.0
908,738 + +1.6
908,738 + SMc00878 0.67 +0.5
908,738 + SMc00878 0.67 +1.2
908,739 - SMc00878 0.67 -0.1
908,739 - SMc00878 0.67 -0.9
908,739 - SMc00878 0.67 -0.3
908,739 - SMc00878 0.67 -3.1
908,739 - SMc00878 0.67 -1.6
908,740 + SMc00878 0.68 +0.5
908,741 - SMc00878 0.68 -3.9
908,741 - SMc00878 0.68 -0.1
908,879 - SMc00878 0.86 -1.7
908,880 + SMc00878 0.87 -0.4
908,880 + SMc00878 0.87 +0.5
908,881 - SMc00878 0.87 -0.7
908,893 + SMc00878 0.88 +0.2
908,894 - SMc00878 0.88 -0.5
908,957 + +0.0
908,957 + -0.2
908,958 - -0.1
908,997 + -2.3
908,997 + -0.3
908,998 - +1.6
908,998 - +2.5
909,182 + -0.5
909,209 + -1.1
909,243 + SMc00877 0.13 -0.9
909,281 + SMc00877 0.18 -0.1
909,281 + SMc00877 0.18 -3.7
909,316 + SMc00877 0.22 -0.7
909,387 - SMc00877 0.30 -1.1
909,445 + SMc00877 0.37 -1.3
909,445 + SMc00877 0.37 -0.9
909,445 + SMc00877 0.37 -0.6
909,445 + SMc00877 0.37 -0.3
909,446 - SMc00877 0.38 +0.6
909,571 + SMc00877 0.53 -3.7
909,571 + SMc00877 0.53 -1.0
909,571 + SMc00877 0.53 +0.6
909,572 - SMc00877 0.53 +0.8
909,599 + SMc00877 0.56 +1.1
909,599 + SMc00877 0.56 -0.0
909,614 - SMc00877 0.58 -1.5
909,727 + SMc00877 0.71 -1.3
909,727 + SMc00877 0.71 +0.2
909,727 + SMc00877 0.71 +0.8
909,727 + SMc00877 0.71 -0.5
909,728 - SMc00877 0.71 -0.3
909,847 - SMc00877 0.86 -0.7
909,880 + SMc00877 0.90 +0.2
909,880 + SMc00877 0.90 -2.0
909,881 - SMc00877 0.90 -1.7
909,955 + +0.3
909,955 + -0.8
909,955 + -1.2
909,956 - -0.8
909,957 + -1.3
909,965 - -1.0
909,977 + +0.0
909,977 + +0.2

Or see this region's nucleotide sequence