Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00787 and SMc00788 are separated by 10 nucleotides SMc00788 and SMc00789 are separated by 1 nucleotides SMc00789 and SMc00790 overlap by 4 nucleotides
SMc00787: SMc00787 - peptide ABC transporter permease, at 809,186 to 810,190
SMc00787
SMc00788: SMc00788 - peptide ABC transporter permease, at 810,201 to 811,109
SMc00788
SMc00789: SMc00789 - peptide ABC transporter ATP-binding protein, at 811,111 to 811,965
SMc00789
SMc00790: SMc00790 - peptide ABC transporter ATP-binding protein, at 811,962 to 812,789
SMc00790
Position (kb) 810
811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 809.381 kb on + strand, within SMc00787 at 809.381 kb on + strand, within SMc00787 at 809.390 kb on + strand, within SMc00787 at 809.745 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.882 kb on + strand, within SMc00787 at 809.883 kb on - strand, within SMc00787 at 809.883 kb on - strand, within SMc00787 at 810.083 kb on + strand, within SMc00787 at 810.083 kb on + strand, within SMc00787 at 810.093 kb on + strand at 810.093 kb on + strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.094 kb on - strand at 810.114 kb on + strand at 810.200 kb on + strand at 810.201 kb on - strand at 810.201 kb on - strand at 810.229 kb on + strand at 810.274 kb on - strand at 810.489 kb on + strand, within SMc00788 at 810.489 kb on + strand, within SMc00788 at 810.490 kb on - strand, within SMc00788 at 810.490 kb on - strand, within SMc00788 at 810.777 kb on + strand, within SMc00788 at 810.778 kb on - strand, within SMc00788 at 811.028 kb on + strand at 811.028 kb on + strand at 811.084 kb on + strand at 811.085 kb on - strand at 811.085 kb on - strand at 811.334 kb on + strand, within SMc00789 at 811.463 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.523 kb on + strand, within SMc00789 at 811.747 kb on - strand, within SMc00789 at 811.855 kb on + strand, within SMc00789 at 812.001 kb on + strand at 812.059 kb on + strand, within SMc00790 at 812.059 kb on + strand, within SMc00790
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 809,381 + SMc00787 0.19 +0.2 809,381 + SMc00787 0.19 +1.1 809,390 + SMc00787 0.20 -0.3 809,745 + SMc00787 0.56 +0.3 809,882 + SMc00787 0.69 -0.5 809,882 + SMc00787 0.69 +1.8 809,882 + SMc00787 0.69 -1.1 809,882 + SMc00787 0.69 +1.4 809,883 - SMc00787 0.69 +0.4 809,883 - SMc00787 0.69 +0.0 810,083 + SMc00787 0.89 +1.4 810,083 + SMc00787 0.89 -0.5 810,093 + +1.6 810,093 + +0.0 810,094 - -0.7 810,094 - +0.3 810,094 - -3.2 810,094 - -1.7 810,114 + -0.3 810,200 + -1.5 810,201 - -0.5 810,201 - +0.1 810,229 + +1.3 810,274 - +0.4 810,489 + SMc00788 0.32 +0.0 810,489 + SMc00788 0.32 -3.2 810,490 - SMc00788 0.32 -0.4 810,490 - SMc00788 0.32 -0.1 810,777 + SMc00788 0.63 -3.1 810,778 - SMc00788 0.63 -1.0 811,028 + -0.1 811,028 + +0.6 811,084 + +0.2 811,085 - -0.2 811,085 - -1.4 811,334 + SMc00789 0.26 -0.6 811,463 + SMc00789 0.41 -0.7 811,467 + SMc00789 0.42 -3.1 811,467 + SMc00789 0.42 -1.0 811,467 + SMc00789 0.42 +1.0 811,468 - SMc00789 0.42 -2.5 811,468 - SMc00789 0.42 -1.0 811,468 - SMc00789 0.42 -2.1 811,468 - SMc00789 0.42 -2.6 811,523 + SMc00789 0.48 -0.5 811,747 - SMc00789 0.74 -2.7 811,855 + SMc00789 0.87 -2.5 812,001 + +1.3 812,059 + SMc00790 0.12 +0.3 812,059 + SMc00790 0.12 +1.2
Or see this region's nucleotide sequence