Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00350 and SMc00351 are separated by 175 nucleotides SMc00351 and SMc00352 are separated by 1 nucleotides SMc00352 and SMc00353 are separated by 35 nucleotides
SMc00350: SMc00350 - transport transmembrane protein, at 305,507 to 306,772
SMc00350
SMc00351: SMc00351 - hypothetical protein, at 306,948 to 307,541
SMc00351
SMc00352: SMc00352 - acetyltransferase, at 307,543 to 308,070
SMc00352
SMc00353: SMc00353 - transmembrane protein, at 308,106 to 308,828
SMc00353
Position (kb) 306
307
308 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 305.954 kb on - strand, within SMc00350 at 305.954 kb on - strand, within SMc00350 at 306.060 kb on - strand, within SMc00350 at 306.060 kb on - strand, within SMc00350 at 306.094 kb on - strand, within SMc00350 at 306.103 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.357 kb on + strand, within SMc00350 at 306.357 kb on + strand, within SMc00350 at 306.358 kb on - strand, within SMc00350 at 306.358 kb on - strand, within SMc00350 at 306.454 kb on - strand, within SMc00350 at 306.561 kb on - strand, within SMc00350 at 306.681 kb on + strand at 306.732 kb on - strand at 306.732 kb on - strand at 306.908 kb on + strand at 306.909 kb on - strand at 307.252 kb on - strand, within SMc00351 at 307.509 kb on + strand at 307.510 kb on - strand at 307.781 kb on - strand, within SMc00352 at 307.963 kb on + strand, within SMc00352 at 307.963 kb on + strand, within SMc00352 at 307.964 kb on - strand, within SMc00352 at 308.030 kb on - strand at 308.050 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.155 kb on + strand at 308.398 kb on + strand, within SMc00353 at 308.399 kb on - strand, within SMc00353 at 308.399 kb on - strand, within SMc00353
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 305,954 - SMc00350 0.35 -0.3 305,954 - SMc00350 0.35 -1.4 306,060 - SMc00350 0.44 -0.6 306,060 - SMc00350 0.44 -0.4 306,094 - SMc00350 0.46 -1.0 306,103 + SMc00350 0.47 -0.1 306,348 + SMc00350 0.66 +1.2 306,348 + SMc00350 0.66 +1.5 306,348 + SMc00350 0.66 +1.8 306,349 - SMc00350 0.67 +0.7 306,349 - SMc00350 0.67 -0.4 306,349 - SMc00350 0.67 +1.2 306,349 - SMc00350 0.67 -0.9 306,357 + SMc00350 0.67 -1.7 306,357 + SMc00350 0.67 -3.9 306,358 - SMc00350 0.67 +1.3 306,358 - SMc00350 0.67 +0.9 306,454 - SMc00350 0.75 -1.0 306,561 - SMc00350 0.83 -1.4 306,681 + -0.5 306,732 - +1.0 306,732 - +0.1 306,908 + -0.9 306,909 - +0.8 307,252 - SMc00351 0.51 +0.9 307,509 + +0.0 307,510 - -0.9 307,781 - SMc00352 0.45 +1.4 307,963 + SMc00352 0.80 +2.5 307,963 + SMc00352 0.80 -0.9 307,964 - SMc00352 0.80 -0.0 308,030 - +1.7 308,050 + -3.3 308,068 + -0.5 308,068 + -2.0 308,068 + -0.4 308,069 - -3.6 308,069 - -0.3 308,069 - -2.8 308,069 - +0.2 308,069 - +0.2 308,155 + -2.1 308,398 + SMc00353 0.40 -0.6 308,399 - SMc00353 0.41 -1.5 308,399 - SMc00353 0.41 +0.7
Or see this region's nucleotide sequence