Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1751 and SMa1753 are separated by 3 nucleotides SMa1753 and SMa1754 overlap by 4 nucleotides
SMa1751: SMa1751 - ABC transporter permease, at 994,674 to 995,456
SMa1751
SMa1753: SMa1753 - ABC transporter permease, at 995,460 to 996,638
SMa1753
SMa1754: SMa1754 - ABC transporter ATP-binding protein, at 996,635 to 997,714
SMa1754
Position (kb) 995
996
997 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 994.503 kb on + strand at 994.504 kb on - strand at 994.641 kb on - strand at 994.676 kb on - strand at 994.790 kb on + strand, within SMa1751 at 994.790 kb on + strand, within SMa1751 at 994.794 kb on - strand, within SMa1751 at 994.794 kb on - strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 995.071 kb on + strand, within SMa1751 at 995.072 kb on - strand, within SMa1751 at 995.072 kb on - strand, within SMa1751 at 995.152 kb on - strand, within SMa1751 at 995.152 kb on - strand, within SMa1751 at 995.206 kb on - strand, within SMa1751 at 995.206 kb on - strand, within SMa1751 at 995.345 kb on - strand, within SMa1751 at 995.497 kb on + strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.582 kb on - strand, within SMa1753 at 995.582 kb on - strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.645 kb on - strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.648 kb on - strand, within SMa1753 at 995.653 kb on - strand, within SMa1753 at 995.790 kb on - strand, within SMa1753 at 995.800 kb on + strand, within SMa1753 at 995.840 kb on + strand, within SMa1753 at 995.841 kb on - strand, within SMa1753 at 996.053 kb on - strand, within SMa1753 at 996.542 kb on + strand at 996.542 kb on + strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.543 kb on - strand at 996.571 kb on - strand at 996.572 kb on + strand at 996.678 kb on + strand at 996.679 kb on - strand at 997.035 kb on + strand at 997.035 kb on + strand, within SMa1754 at 997.035 kb on + strand, within SMa1754 at 997.036 kb on - strand, within SMa1754 at 997.432 kb on + strand, within SMa1754 at 997.433 kb on - strand, within SMa1754 at 997.433 kb on - strand, within SMa1754 at 997.449 kb on + strand, within SMa1754 at 997.450 kb on - strand, within SMa1754 at 997.450 kb on - strand, within SMa1754 at 997.522 kb on + strand, within SMa1754
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 994,503 + -0.4 994,504 - +0.0 994,641 - +0.1 994,676 - -1.1 994,790 + SMa1751 0.15 -0.9 994,790 + SMa1751 0.15 +1.2 994,794 - SMa1751 0.15 -1.1 994,794 - SMa1751 0.15 -0.3 994,899 + SMa1751 0.29 -2.5 994,899 + SMa1751 0.29 +0.1 994,899 + SMa1751 0.29 -0.9 994,899 + SMa1751 0.29 -2.3 995,071 + SMa1751 0.51 +0.3 995,072 - SMa1751 0.51 -0.9 995,072 - SMa1751 0.51 -0.6 995,152 - SMa1751 0.61 +1.1 995,152 - SMa1751 0.61 +0.4 995,206 - SMa1751 0.68 -0.5 995,206 - SMa1751 0.68 +0.5 995,345 - SMa1751 0.86 -1.5 995,497 + +0.7 995,498 - -0.2 995,498 - -1.4 995,498 - -1.7 995,498 - -0.3 995,582 - SMa1753 0.10 +0.9 995,582 - SMa1753 0.10 -0.0 995,644 + SMa1753 0.16 +0.7 995,644 + SMa1753 0.16 -1.7 995,644 + SMa1753 0.16 +1.2 995,645 - SMa1753 0.16 -2.4 995,647 + SMa1753 0.16 +0.8 995,647 + SMa1753 0.16 -0.4 995,647 + SMa1753 0.16 +0.3 995,647 + SMa1753 0.16 -0.1 995,647 + SMa1753 0.16 +0.9 995,648 - SMa1753 0.16 +1.4 995,653 - SMa1753 0.16 -1.2 995,790 - SMa1753 0.28 +1.8 995,800 + SMa1753 0.29 +2.7 995,840 + SMa1753 0.32 -0.4 995,841 - SMa1753 0.32 -0.7 996,053 - SMa1753 0.50 +0.4 996,542 + +0.1 996,542 + +0.2 996,543 - -0.7 996,543 - -4.6 996,543 - -0.9 996,543 - -0.4 996,571 - +0.7 996,572 + +0.5 996,678 + +0.4 996,679 - -1.7 997,035 + -0.9 997,035 + SMa1754 0.37 +0.1 997,035 + SMa1754 0.37 +1.7 997,036 - SMa1754 0.37 -3.7 997,432 + SMa1754 0.74 -1.1 997,433 - SMa1754 0.74 -1.9 997,433 - SMa1754 0.74 -2.3 997,449 + SMa1754 0.75 +0.7 997,450 - SMa1754 0.75 -2.0 997,450 - SMa1754 0.75 +0.8 997,522 + SMa1754 0.82 -2.3
Or see this region's nucleotide sequence