Strain Fitness in Sinorhizobium meliloti 1021 around SMa1554

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1552 and SMa1554 overlap by 4 nucleotidesSMa1554 and SMa1556 overlap by 68 nucleotides SMa1552: SMa1552 - chemotaxis protein CheR, at 858,465 to 859,826 SMa1552 SMa1554: SMa1554 - chemotaxis protein, at 859,823 to 860,491 SMa1554 SMa1556: SMa1556 - Methyl-accepting chemotaxis protein, at 860,424 to 862,109 SMa1556 Position (kb) 859 860 861Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 858.826 kb on + strand, within SMa1552at 858.826 kb on + strand, within SMa1552at 858.827 kb on - strand, within SMa1552at 858.827 kb on - strand, within SMa1552at 859.116 kb on + strand, within SMa1552at 859.221 kb on + strand, within SMa1552at 859.221 kb on + strand, within SMa1552at 859.292 kb on + strand, within SMa1552at 859.292 kb on + strand, within SMa1552at 859.293 kb on - strand, within SMa1552at 859.597 kb on - strand, within SMa1552at 859.597 kb on - strand, within SMa1552at 859.630 kb on + strand, within SMa1552at 859.631 kb on - strand, within SMa1552at 859.631 kb on - strand, within SMa1552at 859.631 kb on - strand, within SMa1552at 859.631 kb on - strand, within SMa1552at 859.706 kb on - strandat 859.796 kb on - strandat 859.883 kb on - strandat 859.883 kb on - strandat 859.897 kb on - strand, within SMa1554at 859.897 kb on - strand, within SMa1554at 859.949 kb on + strand, within SMa1554at 859.949 kb on + strand, within SMa1554at 859.949 kb on + strand, within SMa1554at 859.950 kb on - strand, within SMa1554at 860.067 kb on - strand, within SMa1554at 860.079 kb on + strand, within SMa1554at 860.139 kb on - strand, within SMa1554at 860.139 kb on - strand, within SMa1554at 860.489 kb on + strandat 860.496 kb on + strandat 860.496 kb on + strandat 860.496 kb on + strandat 860.524 kb on + strandat 860.524 kb on + strandat 860.643 kb on + strand, within SMa1556at 860.644 kb on - strand, within SMa1556at 860.644 kb on - strand, within SMa1556at 860.644 kb on - strand, within SMa1556at 860.644 kb on - strand, within SMa1556at 860.694 kb on - strand, within SMa1556at 861.444 kb on + strand, within SMa1556

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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858,826 + SMa1552 0.27 +0.4
858,826 + SMa1552 0.27 -2.2
858,827 - SMa1552 0.27 -0.5
858,827 - SMa1552 0.27 +0.7
859,116 + SMa1552 0.48 -2.8
859,221 + SMa1552 0.56 +0.4
859,221 + SMa1552 0.56 +0.1
859,292 + SMa1552 0.61 -1.1
859,292 + SMa1552 0.61 +0.8
859,293 - SMa1552 0.61 -0.9
859,597 - SMa1552 0.83 +0.7
859,597 - SMa1552 0.83 +0.8
859,630 + SMa1552 0.86 -0.8
859,631 - SMa1552 0.86 -1.3
859,631 - SMa1552 0.86 +0.8
859,631 - SMa1552 0.86 -3.7
859,631 - SMa1552 0.86 -4.0
859,706 - -1.3
859,796 - -2.5
859,883 - +0.2
859,883 - +1.7
859,897 - SMa1554 0.11 -2.6
859,897 - SMa1554 0.11 +1.0
859,949 + SMa1554 0.19 -1.1
859,949 + SMa1554 0.19 +0.0
859,949 + SMa1554 0.19 -2.0
859,950 - SMa1554 0.19 -3.0
860,067 - SMa1554 0.36 -0.1
860,079 + SMa1554 0.38 -3.0
860,139 - SMa1554 0.47 -3.3
860,139 - SMa1554 0.47 +1.6
860,489 + -1.5
860,496 + -0.3
860,496 + -1.6
860,496 + +0.4
860,524 + +0.8
860,524 + +0.6
860,643 + SMa1556 0.13 -0.6
860,644 - SMa1556 0.13 +0.3
860,644 - SMa1556 0.13 -0.1
860,644 - SMa1556 0.13 +0.8
860,644 - SMa1556 0.13 -2.6
860,694 - SMa1556 0.16 +0.5
861,444 + SMa1556 0.60 -0.3

Or see this region's nucleotide sequence