Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1495 and SMa1497 are separated by 201 nucleotides SMa1497 and SMa1500 are separated by 10 nucleotides
SMa1495: SMa1495 - aminotransferase, at 824,592 to 825,704
SMa1495
SMa1497: SMa1497 - Gst12 glutathione-S-transferase, at 825,906 to 826,553
SMa1497
SMa1500: SMa1500 - oxidoreductase/oxygenase, at 826,564 to 828,330
SMa1500
Position (kb) 825
826
827 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 824.917 kb on + strand, within SMa1495 at 825.290 kb on + strand, within SMa1495 at 825.290 kb on + strand, within SMa1495 at 825.291 kb on - strand, within SMa1495 at 825.291 kb on - strand, within SMa1495 at 825.327 kb on + strand, within SMa1495 at 825.328 kb on - strand, within SMa1495 at 825.357 kb on + strand, within SMa1495 at 825.454 kb on + strand, within SMa1495 at 825.455 kb on - strand, within SMa1495 at 825.873 kb on - strand at 826.155 kb on - strand, within SMa1497 at 826.155 kb on - strand, within SMa1497 at 826.193 kb on - strand, within SMa1497 at 826.193 kb on - strand, within SMa1497 at 826.322 kb on - strand, within SMa1497 at 826.322 kb on - strand, within SMa1497 at 826.322 kb on - strand, within SMa1497 at 826.336 kb on + strand, within SMa1497 at 826.337 kb on - strand, within SMa1497 at 826.475 kb on - strand, within SMa1497 at 826.534 kb on + strand at 826.541 kb on - strand at 826.652 kb on + strand at 826.652 kb on + strand at 826.653 kb on - strand at 826.789 kb on - strand, within SMa1500 at 826.789 kb on - strand, within SMa1500 at 826.789 kb on - strand, within SMa1500 at 826.789 kb on - strand, within SMa1500 at 826.789 kb on - strand, within SMa1500 at 826.841 kb on - strand, within SMa1500 at 826.841 kb on - strand, within SMa1500 at 826.845 kb on + strand, within SMa1500 at 826.846 kb on - strand, within SMa1500 at 826.929 kb on + strand, within SMa1500 at 826.929 kb on + strand, within SMa1500 at 826.950 kb on - strand, within SMa1500 at 826.995 kb on + strand, within SMa1500 at 827.100 kb on - strand, within SMa1500 at 827.130 kb on + strand, within SMa1500 at 827.130 kb on + strand, within SMa1500 at 827.130 kb on + strand, within SMa1500 at 827.130 kb on + strand, within SMa1500 at 827.131 kb on - strand, within SMa1500 at 827.131 kb on - strand, within SMa1500 at 827.324 kb on + strand, within SMa1500 at 827.324 kb on + strand, within SMa1500 at 827.325 kb on - strand, within SMa1500 at 827.360 kb on + strand, within SMa1500 at 827.360 kb on + strand, within SMa1500
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 824,917 + SMa1495 0.29 -3.6 825,290 + SMa1495 0.63 +0.2 825,290 + SMa1495 0.63 -0.5 825,291 - SMa1495 0.63 -1.2 825,291 - SMa1495 0.63 +4.5 825,327 + SMa1495 0.66 -0.1 825,328 - SMa1495 0.66 -1.9 825,357 + SMa1495 0.69 +0.3 825,454 + SMa1495 0.77 -0.3 825,455 - SMa1495 0.78 -0.1 825,873 - -1.0 826,155 - SMa1497 0.38 -0.3 826,155 - SMa1497 0.38 -0.6 826,193 - SMa1497 0.44 +1.2 826,193 - SMa1497 0.44 -0.6 826,322 - SMa1497 0.64 +0.3 826,322 - SMa1497 0.64 -0.8 826,322 - SMa1497 0.64 -2.1 826,336 + SMa1497 0.66 -0.9 826,337 - SMa1497 0.67 +0.3 826,475 - SMa1497 0.88 -1.1 826,534 + -1.9 826,541 - -0.4 826,652 + -0.1 826,652 + +0.4 826,653 - +0.7 826,789 - SMa1500 0.13 +0.9 826,789 - SMa1500 0.13 +2.1 826,789 - SMa1500 0.13 -1.4 826,789 - SMa1500 0.13 -1.2 826,789 - SMa1500 0.13 +0.2 826,841 - SMa1500 0.16 -2.1 826,841 - SMa1500 0.16 +0.3 826,845 + SMa1500 0.16 +4.3 826,846 - SMa1500 0.16 -0.6 826,929 + SMa1500 0.21 +1.7 826,929 + SMa1500 0.21 -1.8 826,950 - SMa1500 0.22 -1.1 826,995 + SMa1500 0.24 +0.7 827,100 - SMa1500 0.30 -0.2 827,130 + SMa1500 0.32 -1.9 827,130 + SMa1500 0.32 +1.0 827,130 + SMa1500 0.32 -0.2 827,130 + SMa1500 0.32 -0.1 827,131 - SMa1500 0.32 -0.3 827,131 - SMa1500 0.32 +0.6 827,324 + SMa1500 0.43 +0.8 827,324 + SMa1500 0.43 -0.6 827,325 - SMa1500 0.43 -0.6 827,360 + SMa1500 0.45 +0.7 827,360 + SMa1500 0.45 -2.1
Or see this region's nucleotide sequence