Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1365 and SMa1367 are separated by 154 nucleotides SMa1367 and SMa1368 are separated by 7 nucleotides SMa1368 and SMa1370 overlap by 1 nucleotides SMa1370 and SMa1371 overlap by 4 nucleotides
SMa1365: SMa1365 - ATP-binding protein, at 750,652 to 751,026
SMa1365
SMa1367: SMa1367 - short chain alcohol dehydrogenase-related dehydrogenase, at 751,181 to 751,939
SMa1367
SMa1368: SMa1368 - hypothetical protein, at 751,947 to 752,672
SMa1368
SMa1370: SMa1370 - ABC transporter ATP-binding protein, at 752,672 to 753,655
SMa1370
SMa1371: SMa1371 - ABC transporter ATP-binding protein, at 753,652 to 754,632
SMa1371
Position (kb) 751
752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 750.953 kb on - strand, within SMa1365 at 751.061 kb on - strand at 751.183 kb on - strand at 751.228 kb on + strand at 751.228 kb on + strand at 751.229 kb on - strand at 751.229 kb on - strand at 751.394 kb on + strand, within SMa1367 at 751.395 kb on - strand, within SMa1367 at 751.814 kb on + strand, within SMa1367 at 752.222 kb on + strand, within SMa1368 at 752.222 kb on + strand, within SMa1368 at 752.388 kb on + strand, within SMa1368 at 752.388 kb on + strand, within SMa1368 at 752.489 kb on + strand, within SMa1368 at 752.896 kb on + strand, within SMa1370 at 752.897 kb on - strand, within SMa1370 at 752.898 kb on + strand, within SMa1370 at 752.899 kb on - strand, within SMa1370 at 752.899 kb on - strand, within SMa1370 at 752.908 kb on + strand, within SMa1370 at 752.908 kb on + strand, within SMa1370 at 752.919 kb on + strand, within SMa1370 at 752.920 kb on - strand, within SMa1370 at 752.961 kb on + strand, within SMa1370 at 752.961 kb on + strand, within SMa1370 at 752.961 kb on + strand, within SMa1370 at 752.961 kb on + strand, within SMa1370 at 752.961 kb on + strand, within SMa1370 at 753.024 kb on + strand, within SMa1370 at 753.025 kb on - strand, within SMa1370 at 753.025 kb on - strand, within SMa1370 at 753.030 kb on - strand, within SMa1370 at 753.059 kb on - strand, within SMa1370 at 753.343 kb on + strand, within SMa1370 at 753.345 kb on + strand, within SMa1370 at 753.346 kb on - strand, within SMa1370 at 753.413 kb on - strand, within SMa1370 at 753.609 kb on + strand at 753.610 kb on - strand at 753.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 750,953 - SMa1365 0.80 -0.9 751,061 - -0.0 751,183 - +0.5 751,228 + +0.3 751,228 + -1.7 751,229 - -0.1 751,229 - -1.2 751,394 + SMa1367 0.28 +0.2 751,395 - SMa1367 0.28 +0.6 751,814 + SMa1367 0.83 -1.1 752,222 + SMa1368 0.38 -1.3 752,222 + SMa1368 0.38 -0.2 752,388 + SMa1368 0.61 -1.5 752,388 + SMa1368 0.61 -0.0 752,489 + SMa1368 0.75 -3.2 752,896 + SMa1370 0.23 +0.7 752,897 - SMa1370 0.23 +1.4 752,898 + SMa1370 0.23 -1.4 752,899 - SMa1370 0.23 -0.9 752,899 - SMa1370 0.23 +1.1 752,908 + SMa1370 0.24 +1.7 752,908 + SMa1370 0.24 +0.2 752,919 + SMa1370 0.25 -0.8 752,920 - SMa1370 0.25 -0.4 752,961 + SMa1370 0.29 -0.2 752,961 + SMa1370 0.29 +2.7 752,961 + SMa1370 0.29 +1.7 752,961 + SMa1370 0.29 -1.3 752,961 + SMa1370 0.29 +0.3 753,024 + SMa1370 0.36 -1.6 753,025 - SMa1370 0.36 -0.3 753,025 - SMa1370 0.36 -1.5 753,030 - SMa1370 0.36 +0.6 753,059 - SMa1370 0.39 +0.6 753,343 + SMa1370 0.68 +0.1 753,345 + SMa1370 0.68 -2.3 753,346 - SMa1370 0.68 -0.4 753,413 - SMa1370 0.75 -0.1 753,609 + -3.1 753,610 - -0.1 753,656 - +0.6
Or see this region's nucleotide sequence