Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0896 and SMa0900 are separated by 590 nucleotides SMa0900 and SMa0903 are separated by 145 nucleotides
SMa0896: SMa0896 - hypothetical protein, at 501,235 to 501,954
SMa0896
SMa0900: SMa0900 - anti-restriction protein, at 502,545 to 503,021
SMa0900
SMa0903: SMa0903 - hypothetical protein, at 503,167 to 504,357
SMa0903
Position (kb) 502
503
504 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 501.637 kb on + strand, within SMa0896 at 501.638 kb on - strand, within SMa0896 at 501.707 kb on - strand, within SMa0896 at 501.770 kb on - strand, within SMa0896 at 501.770 kb on - strand, within SMa0896 at 501.816 kb on + strand, within SMa0896 at 501.816 kb on + strand, within SMa0896 at 501.817 kb on - strand, within SMa0896 at 501.817 kb on - strand, within SMa0896 at 501.817 kb on - strand, within SMa0896 at 501.836 kb on + strand, within SMa0896 at 501.912 kb on + strand at 501.913 kb on - strand at 501.913 kb on - strand at 502.040 kb on + strand at 502.335 kb on - strand at 502.391 kb on - strand at 502.592 kb on + strand at 502.593 kb on - strand, within SMa0900 at 502.716 kb on + strand, within SMa0900 at 502.717 kb on - strand, within SMa0900 at 502.717 kb on - strand, within SMa0900 at 502.719 kb on - strand, within SMa0900 at 502.719 kb on - strand, within SMa0900 at 502.749 kb on + strand, within SMa0900 at 502.750 kb on - strand, within SMa0900 at 502.773 kb on + strand, within SMa0900 at 502.966 kb on - strand, within SMa0900 at 502.972 kb on - strand, within SMa0900 at 503.221 kb on - strand at 503.458 kb on + strand, within SMa0903 at 503.473 kb on - strand, within SMa0903 at 503.763 kb on + strand, within SMa0903 at 503.776 kb on - strand, within SMa0903 at 503.776 kb on - strand, within SMa0903 at 503.788 kb on + strand, within SMa0903 at 503.813 kb on + strand, within SMa0903 at 503.813 kb on + strand, within SMa0903 at 503.814 kb on - strand, within SMa0903 at 503.814 kb on - strand, within SMa0903 at 503.879 kb on - strand, within SMa0903 at 503.894 kb on - strand, within SMa0903 at 503.894 kb on - strand, within SMa0903 at 503.894 kb on - strand, within SMa0903 at 503.944 kb on + strand, within SMa0903 at 503.971 kb on - strand, within SMa0903
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 501,637 + SMa0896 0.56 +0.4 501,638 - SMa0896 0.56 +0.1 501,707 - SMa0896 0.66 -0.3 501,770 - SMa0896 0.74 -1.0 501,770 - SMa0896 0.74 +1.1 501,816 + SMa0896 0.81 -2.0 501,816 + SMa0896 0.81 -2.9 501,817 - SMa0896 0.81 -0.4 501,817 - SMa0896 0.81 -4.3 501,817 - SMa0896 0.81 -0.4 501,836 + SMa0896 0.83 -3.2 501,912 + +0.7 501,913 - -1.0 501,913 - -0.1 502,040 + -0.9 502,335 - +2.5 502,391 - -0.5 502,592 + -0.5 502,593 - SMa0900 0.10 -0.7 502,716 + SMa0900 0.36 -0.5 502,717 - SMa0900 0.36 -1.0 502,717 - SMa0900 0.36 -1.0 502,719 - SMa0900 0.36 +1.7 502,719 - SMa0900 0.36 -2.5 502,749 + SMa0900 0.43 -0.5 502,750 - SMa0900 0.43 -0.1 502,773 + SMa0900 0.48 -1.0 502,966 - SMa0900 0.88 -2.6 502,972 - SMa0900 0.90 -0.9 503,221 - -1.9 503,458 + SMa0903 0.24 +0.6 503,473 - SMa0903 0.26 -0.9 503,763 + SMa0903 0.50 +1.8 503,776 - SMa0903 0.51 -3.5 503,776 - SMa0903 0.51 -3.5 503,788 + SMa0903 0.52 -1.9 503,813 + SMa0903 0.54 -0.2 503,813 + SMa0903 0.54 +0.0 503,814 - SMa0903 0.54 +0.1 503,814 - SMa0903 0.54 +0.3 503,879 - SMa0903 0.60 +0.5 503,894 - SMa0903 0.61 +1.7 503,894 - SMa0903 0.61 -0.3 503,894 - SMa0903 0.61 -0.3 503,944 + SMa0903 0.65 -2.9 503,971 - SMa0903 0.68 +0.1
Or see this region's nucleotide sequence