Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0659 and SMa0661 are separated by 366 nucleotides SMa0661 and SMa0662 are separated by 57 nucleotides SMa0662 and SMa0663 are separated by 114 nucleotides SMa0663 and SMa0664 are separated by 140 nucleotides
SMa0659: SMa0659 - cytochrome c binding protein, carboxyl terminus, at 349,623 to 350,021
SMa0659
SMa0661: SMa0661 - hypothetical protein, at 350,388 to 350,867
SMa0661
SMa0662: SMa0662 - transcriptional regulator FixK, at 350,925 to 351,560
SMa0662
SMa0663: SMa0663 - hypothetical protein, at 351,675 to 351,944
SMa0663
SMa0664: SMa0664 - hypothetical protein, at 352,085 to 353,842
SMa0664
Position (kb) 350
351
352 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 350.219 kb on + strand at 350.329 kb on - strand at 350.339 kb on + strand at 350.340 kb on - strand at 350.362 kb on + strand at 350.364 kb on + strand at 350.493 kb on + strand, within SMa0661 at 350.494 kb on - strand, within SMa0661 at 350.527 kb on + strand, within SMa0661 at 350.566 kb on + strand, within SMa0661 at 351.222 kb on + strand, within SMa0662 at 351.386 kb on + strand, within SMa0662 at 351.386 kb on + strand, within SMa0662 at 351.387 kb on - strand, within SMa0662 at 351.389 kb on - strand, within SMa0662 at 351.419 kb on - strand, within SMa0662 at 351.419 kb on - strand, within SMa0662 at 351.419 kb on - strand, within SMa0662 at 351.448 kb on + strand, within SMa0662 at 351.522 kb on + strand at 351.522 kb on + strand at 351.522 kb on + strand at 351.522 kb on + strand at 351.523 kb on - strand at 351.524 kb on + strand at 351.525 kb on - strand at 351.525 kb on - strand at 351.527 kb on - strand at 351.527 kb on - strand at 351.554 kb on + strand at 351.634 kb on - strand at 351.705 kb on + strand, within SMa0663 at 351.706 kb on - strand, within SMa0663 at 351.732 kb on + strand, within SMa0663 at 351.732 kb on + strand, within SMa0663 at 351.996 kb on + strand at 352.014 kb on + strand at 352.026 kb on - strand at 352.026 kb on - strand at 352.027 kb on + strand at 352.028 kb on - strand at 352.035 kb on + strand at 352.037 kb on + strand at 352.158 kb on + strand at 352.227 kb on - strand at 352.418 kb on - strand, within SMa0664 at 352.479 kb on + strand, within SMa0664
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 350,219 + -1.6 350,329 - +0.4 350,339 + -0.3 350,340 - -1.4 350,362 + +0.6 350,364 + -0.3 350,493 + SMa0661 0.22 -0.4 350,494 - SMa0661 0.22 -0.3 350,527 + SMa0661 0.29 +0.3 350,566 + SMa0661 0.37 +0.5 351,222 + SMa0662 0.47 -0.6 351,386 + SMa0662 0.72 -3.9 351,386 + SMa0662 0.72 -1.7 351,387 - SMa0662 0.73 -1.4 351,389 - SMa0662 0.73 -1.3 351,419 - SMa0662 0.78 -0.8 351,419 - SMa0662 0.78 -1.5 351,419 - SMa0662 0.78 -0.1 351,448 + SMa0662 0.82 -1.3 351,522 + +1.9 351,522 + -0.8 351,522 + +1.4 351,522 + +0.3 351,523 - +0.9 351,524 + +0.0 351,525 - +0.5 351,525 - -0.9 351,527 - +1.7 351,527 - -0.3 351,554 + +2.1 351,634 - +0.1 351,705 + SMa0663 0.11 -0.2 351,706 - SMa0663 0.11 +1.5 351,732 + SMa0663 0.21 -1.0 351,732 + SMa0663 0.21 -2.6 351,996 + -1.8 352,014 + +0.3 352,026 - -1.8 352,026 - -0.6 352,027 + -1.1 352,028 - +0.5 352,035 + +1.1 352,037 + -2.6 352,158 + -1.2 352,227 - +2.1 352,418 - SMa0664 0.19 -0.7 352,479 + SMa0664 0.22 -0.2
Or see this region's nucleotide sequence