Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0288 and SMa0291 are separated by 274 nucleotides SMa0291 and SMa0293 are separated by 288 nucleotides
SMa0288: SMa0288 - hypothetical protein, at 160,505 to 161,341
SMa0288
SMa0291: SMa0291 - hypothetical protein, at 161,616 to 161,984
SMa0291
SMa0293: SMa0293 - hypothetical protein, at 162,273 to 162,668
SMa0293
Position (kb) 161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 160.663 kb on + strand, within SMa0288 at 160.663 kb on + strand, within SMa0288 at 160.664 kb on - strand, within SMa0288 at 160.735 kb on - strand, within SMa0288 at 160.751 kb on + strand, within SMa0288 at 160.752 kb on - strand, within SMa0288 at 160.803 kb on + strand, within SMa0288 at 160.804 kb on - strand, within SMa0288 at 160.891 kb on - strand, within SMa0288 at 160.891 kb on - strand, within SMa0288 at 161.063 kb on + strand, within SMa0288 at 161.063 kb on + strand, within SMa0288 at 161.064 kb on - strand, within SMa0288 at 161.064 kb on - strand, within SMa0288 at 161.139 kb on + strand, within SMa0288 at 161.140 kb on - strand, within SMa0288 at 161.140 kb on - strand, within SMa0288 at 161.174 kb on + strand, within SMa0288 at 161.174 kb on + strand, within SMa0288 at 161.183 kb on + strand, within SMa0288 at 161.184 kb on - strand, within SMa0288 at 161.184 kb on - strand, within SMa0288 at 161.243 kb on + strand, within SMa0288 at 161.362 kb on + strand at 161.363 kb on - strand at 161.543 kb on + strand at 161.571 kb on + strand at 161.571 kb on + strand at 161.615 kb on + strand at 161.616 kb on - strand at 161.643 kb on - strand at 161.691 kb on + strand, within SMa0291 at 161.876 kb on - strand, within SMa0291 at 161.955 kb on - strand at 161.982 kb on + strand at 161.982 kb on + strand at 161.982 kb on + strand at 161.983 kb on - strand at 161.983 kb on - strand at 162.007 kb on + strand at 162.008 kb on - strand at 162.031 kb on - strand at 162.085 kb on + strand at 162.262 kb on - strand at 162.274 kb on + strand at 162.369 kb on - strand, within SMa0293 at 162.374 kb on + strand, within SMa0293 at 162.421 kb on + strand, within SMa0293 at 162.514 kb on - strand, within SMa0293 at 162.599 kb on + strand, within SMa0293 at 162.651 kb on + strand at 162.651 kb on + strand at 162.686 kb on + strand at 162.687 kb on - strand at 162.687 kb on - strand at 162.820 kb on - strand at 162.839 kb on - strand at 162.976 kb on + strand at 162.983 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 160,663 + SMa0288 0.19 -0.1 160,663 + SMa0288 0.19 +1.1 160,664 - SMa0288 0.19 -2.5 160,735 - SMa0288 0.27 +2.8 160,751 + SMa0288 0.29 +0.4 160,752 - SMa0288 0.30 +0.5 160,803 + SMa0288 0.36 -0.9 160,804 - SMa0288 0.36 -1.0 160,891 - SMa0288 0.46 -1.3 160,891 - SMa0288 0.46 -1.0 161,063 + SMa0288 0.67 -0.7 161,063 + SMa0288 0.67 -3.4 161,064 - SMa0288 0.67 +1.8 161,064 - SMa0288 0.67 -2.8 161,139 + SMa0288 0.76 -0.6 161,140 - SMa0288 0.76 -0.5 161,140 - SMa0288 0.76 -2.7 161,174 + SMa0288 0.80 -2.4 161,174 + SMa0288 0.80 -3.1 161,183 + SMa0288 0.81 +0.6 161,184 - SMa0288 0.81 -1.0 161,184 - SMa0288 0.81 +1.8 161,243 + SMa0288 0.88 +0.0 161,362 + +1.8 161,363 - +0.3 161,543 + +1.8 161,571 + +1.1 161,571 + -0.6 161,615 + +0.1 161,616 - -1.9 161,643 - -2.4 161,691 + SMa0291 0.20 -2.1 161,876 - SMa0291 0.70 +0.8 161,955 - -1.4 161,982 + -0.1 161,982 + -2.8 161,982 + +0.7 161,983 - +1.7 161,983 - -1.4 162,007 + +1.9 162,008 - +0.4 162,031 - -1.6 162,085 + -0.1 162,262 - +0.9 162,274 + +0.7 162,369 - SMa0293 0.24 +0.8 162,374 + SMa0293 0.26 -1.4 162,421 + SMa0293 0.37 +0.0 162,514 - SMa0293 0.61 +1.3 162,599 + SMa0293 0.82 +0.5 162,651 + -0.2 162,651 + +0.5 162,686 + +0.2 162,687 - +1.1 162,687 - +0.5 162,820 - -0.5 162,839 - -0.4 162,976 + +0.5 162,983 + +0.1
Or see this region's nucleotide sequence