Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0259 and SMa0260 are separated by 15 nucleotides SMa0260 and SMa0263 are separated by 16 nucleotides
SMa0259: SMa0259 - hypothetical protein, at 145,822 to 146,667
SMa0259
SMa0260: SMa0260 - GabD3 succinate-semialdehyde dehdyrogenase, at 146,683 to 148,146
SMa0260
SMa0263: SMa0263 - alcohol dehydrogenase, at 148,163 to 149,362
SMa0263
Position (kb) 146
147
148
149 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 145.686 kb on + strand at 145.867 kb on + strand at 145.970 kb on - strand, within SMa0259 at 145.971 kb on - strand, within SMa0259 at 146.015 kb on + strand, within SMa0259 at 146.015 kb on + strand, within SMa0259 at 146.016 kb on - strand, within SMa0259 at 146.055 kb on + strand, within SMa0259 at 146.426 kb on + strand, within SMa0259 at 146.427 kb on - strand, within SMa0259 at 146.427 kb on - strand, within SMa0259 at 146.453 kb on + strand, within SMa0259 at 146.548 kb on + strand, within SMa0259 at 146.548 kb on + strand, within SMa0259 at 146.549 kb on - strand, within SMa0259 at 146.688 kb on - strand at 146.702 kb on + strand at 146.876 kb on + strand, within SMa0260 at 146.876 kb on + strand, within SMa0260 at 146.882 kb on + strand, within SMa0260 at 146.897 kb on + strand, within SMa0260 at 146.897 kb on + strand, within SMa0260 at 146.897 kb on + strand, within SMa0260 at 146.905 kb on - strand, within SMa0260 at 146.999 kb on - strand, within SMa0260 at 147.035 kb on + strand, within SMa0260 at 147.036 kb on - strand, within SMa0260 at 147.245 kb on + strand, within SMa0260 at 147.245 kb on + strand, within SMa0260 at 147.409 kb on + strand, within SMa0260 at 147.410 kb on - strand, within SMa0260 at 147.484 kb on + strand, within SMa0260 at 147.566 kb on + strand, within SMa0260 at 147.567 kb on - strand, within SMa0260 at 147.567 kb on - strand, within SMa0260 at 147.567 kb on - strand, within SMa0260 at 147.567 kb on - strand, within SMa0260 at 147.718 kb on - strand, within SMa0260 at 147.804 kb on - strand, within SMa0260 at 147.853 kb on + strand, within SMa0260 at 148.027 kb on - strand at 148.051 kb on + strand at 148.085 kb on + strand at 148.086 kb on - strand at 148.253 kb on + strand at 148.458 kb on + strand, within SMa0263 at 148.459 kb on - strand, within SMa0263 at 148.467 kb on - strand, within SMa0263 at 148.892 kb on - strand, within SMa0263 at 148.993 kb on - strand, within SMa0263 at 149.001 kb on + strand, within SMa0263 at 149.004 kb on + strand, within SMa0263 at 149.004 kb on + strand, within SMa0263 at 149.005 kb on - strand, within SMa0263
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 145,686 + +0.8 145,867 + -0.6 145,970 - SMa0259 0.17 -1.3 145,971 - SMa0259 0.18 -1.7 146,015 + SMa0259 0.23 +1.0 146,015 + SMa0259 0.23 -1.2 146,016 - SMa0259 0.23 -0.8 146,055 + SMa0259 0.28 -1.9 146,426 + SMa0259 0.71 +0.2 146,427 - SMa0259 0.72 +0.2 146,427 - SMa0259 0.72 -0.5 146,453 + SMa0259 0.75 +0.5 146,548 + SMa0259 0.86 -1.6 146,548 + SMa0259 0.86 +0.2 146,549 - SMa0259 0.86 -2.9 146,688 - -1.4 146,702 + +0.8 146,876 + SMa0260 0.13 -0.8 146,876 + SMa0260 0.13 +0.6 146,882 + SMa0260 0.14 -0.2 146,897 + SMa0260 0.15 -0.8 146,897 + SMa0260 0.15 -1.1 146,897 + SMa0260 0.15 +1.8 146,905 - SMa0260 0.15 -3.5 146,999 - SMa0260 0.22 -0.9 147,035 + SMa0260 0.24 -0.9 147,036 - SMa0260 0.24 -1.0 147,245 + SMa0260 0.38 -0.2 147,245 + SMa0260 0.38 +0.4 147,409 + SMa0260 0.50 +0.0 147,410 - SMa0260 0.50 +0.0 147,484 + SMa0260 0.55 +0.4 147,566 + SMa0260 0.60 -1.1 147,567 - SMa0260 0.60 -1.9 147,567 - SMa0260 0.60 -0.2 147,567 - SMa0260 0.60 -1.3 147,567 - SMa0260 0.60 -2.6 147,718 - SMa0260 0.71 -1.4 147,804 - SMa0260 0.77 -2.6 147,853 + SMa0260 0.80 -0.2 148,027 - -1.5 148,051 + +1.1 148,085 + +1.8 148,086 - +0.2 148,253 + +0.8 148,458 + SMa0263 0.25 +2.6 148,459 - SMa0263 0.25 +0.1 148,467 - SMa0263 0.25 -1.0 148,892 - SMa0263 0.61 +0.4 148,993 - SMa0263 0.69 -0.6 149,001 + SMa0263 0.70 +1.8 149,004 + SMa0263 0.70 -0.7 149,004 + SMa0263 0.70 +0.5 149,005 - SMa0263 0.70 +0.3
Or see this region's nucleotide sequence