Strain Fitness in Sinorhizobium meliloti 1021 around SMa0198

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0196 and SMa0197 are separated by 14 nucleotidesSMa0197 and SMa0198 overlap by 4 nucleotidesSMa0198 and SMa0199 overlap by 4 nucleotides SMa0196: SMa0196 - gluconolactonase, at 106,949 to 107,863 SMa0196 SMa0197: SMa0197 - ABC transporter permease, at 107,878 to 108,825 SMa0197 SMa0198: SMa0198 - ABC transporter permease, at 108,822 to 109,769 SMa0198 SMa0199: SMa0199 - ABC transporter ATP-binding protein, at 109,766 to 111,229 SMa0199 Position (kb) 108 109 110Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 107.844 kb on + strandat 107.969 kb on + strandat 108.182 kb on + strand, within SMa0197at 108.182 kb on + strand, within SMa0197at 108.182 kb on + strand, within SMa0197at 108.269 kb on + strand, within SMa0197at 108.270 kb on - strand, within SMa0197at 108.361 kb on - strand, within SMa0197at 108.489 kb on + strand, within SMa0197at 108.491 kb on + strand, within SMa0197at 108.492 kb on - strand, within SMa0197at 108.813 kb on + strandat 109.116 kb on + strand, within SMa0198at 109.117 kb on - strand, within SMa0198at 109.145 kb on - strand, within SMa0198at 109.272 kb on + strand, within SMa0198at 109.273 kb on - strand, within SMa0198at 109.465 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.663 kb on + strand, within SMa0198at 109.664 kb on - strand, within SMa0198at 109.664 kb on - strand, within SMa0198at 109.664 kb on - strand, within SMa0198at 109.664 kb on - strand, within SMa0198at 109.795 kb on + strandat 109.795 kb on + strandat 109.796 kb on - strandat 109.796 kb on - strandat 109.796 kb on - strandat 109.796 kb on - strandat 109.860 kb on + strandat 109.861 kb on - strandat 109.861 kb on - strandat 109.861 kb on - strandat 109.861 kb on - strandat 109.861 kb on - strandat 109.902 kb on + strandat 109.950 kb on + strand, within SMa0199at 109.950 kb on + strand, within SMa0199at 109.951 kb on - strand, within SMa0199at 110.134 kb on + strand, within SMa0199at 110.396 kb on - strand, within SMa0199at 110.475 kb on - strand, within SMa0199at 110.564 kb on - strand, within SMa0199at 110.596 kb on + strand, within SMa0199at 110.596 kb on + strand, within SMa0199at 110.597 kb on - strand, within SMa0199

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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107,844 + +0.5
107,969 + +1.0
108,182 + SMa0197 0.32 +0.7
108,182 + SMa0197 0.32 +2.2
108,182 + SMa0197 0.32 -1.6
108,269 + SMa0197 0.41 -0.6
108,270 - SMa0197 0.41 +1.5
108,361 - SMa0197 0.51 -0.4
108,489 + SMa0197 0.64 -4.0
108,491 + SMa0197 0.65 -1.3
108,492 - SMa0197 0.65 -1.5
108,813 + +1.4
109,116 + SMa0198 0.31 +0.3
109,117 - SMa0198 0.31 -1.1
109,145 - SMa0198 0.34 +0.0
109,272 + SMa0198 0.47 +0.7
109,273 - SMa0198 0.48 +0.0
109,465 + SMa0198 0.68 -1.9
109,663 + SMa0198 0.89 +0.7
109,663 + SMa0198 0.89 +1.7
109,663 + SMa0198 0.89 -2.6
109,663 + SMa0198 0.89 -1.4
109,663 + SMa0198 0.89 +0.2
109,663 + SMa0198 0.89 +0.2
109,663 + SMa0198 0.89 -0.8
109,664 - SMa0198 0.89 -0.4
109,664 - SMa0198 0.89 +0.2
109,664 - SMa0198 0.89 -1.8
109,664 - SMa0198 0.89 -1.1
109,795 + -0.6
109,795 + -2.0
109,796 - -0.8
109,796 - +1.0
109,796 - -0.0
109,796 - +0.9
109,860 + -2.3
109,861 - -0.7
109,861 - +5.6
109,861 - +0.0
109,861 - -3.4
109,861 - -0.5
109,902 + -0.1
109,950 + SMa0199 0.13 +0.3
109,950 + SMa0199 0.13 +0.1
109,951 - SMa0199 0.13 +0.4
110,134 + SMa0199 0.25 -0.5
110,396 - SMa0199 0.43 -0.7
110,475 - SMa0199 0.48 +1.7
110,564 - SMa0199 0.55 +0.0
110,596 + SMa0199 0.57 +0.7
110,596 + SMa0199 0.57 +1.9
110,597 - SMa0199 0.57 -0.6

Or see this region's nucleotide sequence