Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21630 and SM_b21631 are separated by 43 nucleotides SM_b21631 and SM_b21632 are separated by 119 nucleotides
SM_b21630: SM_b21630 - hypothetical protein, at 1,657,750 to 1,658,991
_b21630
SM_b21631: SM_b21631 - carboxynorspermidine decarboxylase, at 1,659,035 to 1,660,132
_b21631
SM_b21632: SM_b21632 - 3-hydroxyacyl-CoA dehydrogenase, at 1,660,252 to 1,661,568
_b21632
Position (kb)
1659
1660
1661 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1658.198 kb on + strand, within SM_b21630 at 1658.198 kb on + strand, within SM_b21630 at 1658.198 kb on + strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.283 kb on + strand, within SM_b21630 at 1658.284 kb on - strand, within SM_b21630 at 1658.284 kb on - strand, within SM_b21630 at 1658.284 kb on - strand, within SM_b21630 at 1658.286 kb on - strand, within SM_b21630 at 1658.376 kb on - strand, within SM_b21630 at 1658.376 kb on - strand, within SM_b21630 at 1658.433 kb on - strand, within SM_b21630 at 1658.492 kb on + strand, within SM_b21630 at 1658.516 kb on + strand, within SM_b21630 at 1658.603 kb on + strand, within SM_b21630 at 1658.604 kb on - strand, within SM_b21630 at 1658.604 kb on - strand, within SM_b21630 at 1658.604 kb on - strand, within SM_b21630 at 1658.667 kb on + strand, within SM_b21630 at 1658.668 kb on - strand, within SM_b21630 at 1658.669 kb on + strand, within SM_b21630 at 1658.669 kb on + strand, within SM_b21630 at 1658.669 kb on + strand, within SM_b21630 at 1658.670 kb on - strand, within SM_b21630 at 1658.737 kb on + strand, within SM_b21630 at 1658.738 kb on - strand, within SM_b21630 at 1658.738 kb on - strand, within SM_b21630 at 1658.896 kb on - strand at 1658.896 kb on - strand at 1658.901 kb on + strand at 1658.901 kb on + strand at 1658.902 kb on - strand at 1658.902 kb on - strand at 1658.902 kb on - strand at 1658.911 kb on + strand at 1658.911 kb on + strand at 1658.911 kb on + strand at 1658.911 kb on + strand at 1658.911 kb on + strand at 1658.912 kb on - strand at 1658.912 kb on - strand at 1659.001 kb on + strand at 1659.001 kb on + strand at 1659.001 kb on + strand at 1659.012 kb on - strand at 1659.202 kb on + strand, within SM_b21631 at 1659.203 kb on - strand, within SM_b21631 at 1659.203 kb on - strand, within SM_b21631 at 1659.270 kb on + strand, within SM_b21631 at 1659.270 kb on + strand, within SM_b21631 at 1659.271 kb on - strand, within SM_b21631 at 1659.271 kb on - strand, within SM_b21631 at 1659.271 kb on - strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.274 kb on + strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.275 kb on - strand, within SM_b21631 at 1659.315 kb on + strand, within SM_b21631 at 1659.381 kb on + strand, within SM_b21631 at 1659.381 kb on + strand, within SM_b21631 at 1659.382 kb on - strand, within SM_b21631 at 1659.451 kb on - strand, within SM_b21631 at 1659.451 kb on - strand, within SM_b21631 at 1659.891 kb on + strand, within SM_b21631 at 1659.891 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.901 kb on + strand, within SM_b21631 at 1659.902 kb on - strand, within SM_b21631 at 1659.902 kb on - strand, within SM_b21631 at 1659.903 kb on + strand, within SM_b21631 at 1659.904 kb on - strand, within SM_b21631 at 1659.904 kb on - strand, within SM_b21631 at 1659.979 kb on + strand, within SM_b21631 at 1659.979 kb on + strand, within SM_b21631 at 1659.980 kb on - strand, within SM_b21631 at 1659.980 kb on - strand, within SM_b21631 at 1659.981 kb on + strand, within SM_b21631 at 1659.982 kb on - strand, within SM_b21631 at 1660.113 kb on + strand at 1660.114 kb on - strand at 1660.114 kb on - strand at 1660.114 kb on - strand at 1660.153 kb on - strand at 1660.153 kb on - strand at 1660.173 kb on - strand at 1660.616 kb on + strand, within SM_b21632 at 1660.622 kb on + strand, within SM_b21632 at 1660.909 kb on + strand, within SM_b21632 at 1661.087 kb on + strand, within SM_b21632
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 1,658,198 + SM_b21630 0.36 -0.6 1,658,198 + SM_b21630 0.36 +1.2 1,658,198 + SM_b21630 0.36 +4.4 1,658,199 - SM_b21630 0.36 -1.1 1,658,199 - SM_b21630 0.36 -0.8 1,658,199 - SM_b21630 0.36 +1.8 1,658,199 - SM_b21630 0.36 -0.8 1,658,283 + SM_b21630 0.43 -0.0 1,658,284 - SM_b21630 0.43 -0.9 1,658,284 - SM_b21630 0.43 +0.8 1,658,284 - SM_b21630 0.43 +0.0 1,658,286 - SM_b21630 0.43 -0.5 1,658,376 - SM_b21630 0.50 +2.1 1,658,376 - SM_b21630 0.50 +0.2 1,658,433 - SM_b21630 0.55 -4.7 1,658,492 + SM_b21630 0.60 +0.8 1,658,516 + SM_b21630 0.62 +2.4 1,658,603 + SM_b21630 0.69 -2.7 1,658,604 - SM_b21630 0.69 -2.1 1,658,604 - SM_b21630 0.69 -0.9 1,658,604 - SM_b21630 0.69 +1.6 1,658,667 + SM_b21630 0.74 +0.3 1,658,668 - SM_b21630 0.74 -0.0 1,658,669 + SM_b21630 0.74 -2.4 1,658,669 + SM_b21630 0.74 -0.8 1,658,669 + SM_b21630 0.74 +0.1 1,658,670 - SM_b21630 0.74 +0.8 1,658,737 + SM_b21630 0.79 -2.5 1,658,738 - SM_b21630 0.80 +0.4 1,658,738 - SM_b21630 0.80 -0.7 1,658,896 - +1.6 1,658,896 - +0.1 1,658,901 + -0.1 1,658,901 + +1.9 1,658,902 - -3.7 1,658,902 - -0.7 1,658,902 - +1.3 1,658,911 + +0.7 1,658,911 + -0.6 1,658,911 + -1.0 1,658,911 + +0.2 1,658,911 + -1.7 1,658,912 - -1.2 1,658,912 - +0.0 1,659,001 + -1.5 1,659,001 + -0.3 1,659,001 + +2.4 1,659,012 - +0.0 1,659,202 + SM_b21631 0.15 +0.3 1,659,203 - SM_b21631 0.15 +0.4 1,659,203 - SM_b21631 0.15 -4.5 1,659,270 + SM_b21631 0.21 +0.1 1,659,270 + SM_b21631 0.21 -4.1 1,659,271 - SM_b21631 0.21 +0.1 1,659,271 - SM_b21631 0.21 -0.1 1,659,271 - SM_b21631 0.21 -0.1 1,659,274 + SM_b21631 0.22 +0.3 1,659,274 + SM_b21631 0.22 -0.2 1,659,274 + SM_b21631 0.22 +0.3 1,659,274 + SM_b21631 0.22 -0.3 1,659,274 + SM_b21631 0.22 -1.2 1,659,274 + SM_b21631 0.22 -0.2 1,659,274 + SM_b21631 0.22 -0.3 1,659,275 - SM_b21631 0.22 +0.8 1,659,275 - SM_b21631 0.22 -0.3 1,659,275 - SM_b21631 0.22 +0.5 1,659,275 - SM_b21631 0.22 -0.3 1,659,315 + SM_b21631 0.26 -1.3 1,659,381 + SM_b21631 0.32 +0.3 1,659,381 + SM_b21631 0.32 -1.5 1,659,382 - SM_b21631 0.32 -0.6 1,659,451 - SM_b21631 0.38 -0.2 1,659,451 - SM_b21631 0.38 -1.1 1,659,891 + SM_b21631 0.78 +0.3 1,659,891 + SM_b21631 0.78 +0.8 1,659,901 + SM_b21631 0.79 -0.8 1,659,901 + SM_b21631 0.79 +0.6 1,659,901 + SM_b21631 0.79 +0.2 1,659,901 + SM_b21631 0.79 -0.8 1,659,901 + SM_b21631 0.79 +0.2 1,659,901 + SM_b21631 0.79 -0.0 1,659,901 + SM_b21631 0.79 -0.0 1,659,902 - SM_b21631 0.79 +0.0 1,659,902 - SM_b21631 0.79 -3.6 1,659,903 + SM_b21631 0.79 +0.1 1,659,904 - SM_b21631 0.79 -4.3 1,659,904 - SM_b21631 0.79 +0.5 1,659,979 + SM_b21631 0.86 -0.0 1,659,979 + SM_b21631 0.86 -0.4 1,659,980 - SM_b21631 0.86 +1.2 1,659,980 - SM_b21631 0.86 +0.6 1,659,981 + SM_b21631 0.86 -0.6 1,659,982 - SM_b21631 0.86 -0.2 1,660,113 + +0.2 1,660,114 - +0.2 1,660,114 - -0.6 1,660,114 - -0.3 1,660,153 - -0.4 1,660,153 - -0.2 1,660,173 - -2.2 1,660,616 + SM_b21632 0.28 -0.6 1,660,622 + SM_b21632 0.28 -1.0 1,660,909 + SM_b21632 0.50 +0.3 1,661,087 + SM_b21632 0.63 +0.5
Or see this region's nucleotide sequence