Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21188 and SM_b21189 are separated by 17 nucleotides SM_b21189 and SM_b21190 are separated by 1 nucleotides
SM_b21188: SM_b21188 - acyltransferase, at 938,008 to 939,141
_b21188
SM_b21189: SM_b21189 - glycosyltransferase, at 939,159 to 940,262
_b21189
SM_b21190: SM_b21190 - glycosyltransferase, at 940,264 to 941,301
_b21190
Position (kb) 939
940
941 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 938.216 kb on - strand, within SM_b21188 at 938.221 kb on + strand, within SM_b21188 at 938.222 kb on - strand, within SM_b21188 at 938.254 kb on + strand, within SM_b21188 at 938.254 kb on + strand, within SM_b21188 at 938.329 kb on + strand, within SM_b21188 at 938.329 kb on + strand, within SM_b21188 at 938.329 kb on + strand, within SM_b21188 at 938.347 kb on + strand, within SM_b21188 at 938.388 kb on + strand, within SM_b21188 at 938.388 kb on + strand, within SM_b21188 at 938.419 kb on + strand, within SM_b21188 at 938.419 kb on + strand at 938.420 kb on - strand, within SM_b21188 at 938.516 kb on - strand, within SM_b21188 at 938.864 kb on - strand, within SM_b21188 at 938.987 kb on + strand, within SM_b21188 at 938.988 kb on - strand, within SM_b21188 at 939.051 kb on + strand at 939.210 kb on + strand at 939.211 kb on - strand at 939.249 kb on + strand at 939.250 kb on - strand at 939.250 kb on - strand at 939.372 kb on - strand, within SM_b21189 at 939.372 kb on - strand, within SM_b21189 at 939.373 kb on + strand, within SM_b21189 at 939.373 kb on + strand, within SM_b21189 at 939.373 kb on + strand, within SM_b21189 at 939.374 kb on - strand, within SM_b21189 at 939.571 kb on - strand, within SM_b21189 at 939.637 kb on - strand, within SM_b21189 at 939.637 kb on - strand, within SM_b21189 at 939.637 kb on - strand, within SM_b21189 at 939.644 kb on + strand, within SM_b21189 at 939.704 kb on - strand at 939.786 kb on - strand, within SM_b21189 at 939.996 kb on + strand, within SM_b21189 at 939.996 kb on + strand, within SM_b21189 at 939.997 kb on - strand, within SM_b21189 at 939.997 kb on - strand, within SM_b21189 at 940.032 kb on + strand, within SM_b21189 at 940.032 kb on + strand, within SM_b21189 at 940.126 kb on - strand, within SM_b21189 at 940.301 kb on + strand at 940.301 kb on + strand at 940.301 kb on + strand at 940.302 kb on - strand at 940.302 kb on - strand at 940.302 kb on - strand at 940.590 kb on + strand, within SM_b21190 at 940.590 kb on + strand, within SM_b21190 at 940.591 kb on - strand, within SM_b21190 at 940.660 kb on + strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.917 kb on + strand, within SM_b21190 at 940.917 kb on + strand, within SM_b21190 at 940.925 kb on - strand, within SM_b21190 at 940.963 kb on + strand, within SM_b21190 at 940.963 kb on + strand, within SM_b21190 at 941.039 kb on - strand, within SM_b21190 at 941.202 kb on + strand at 941.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 938,216 - SM_b21188 0.18 -4.6 938,221 + SM_b21188 0.19 -0.1 938,222 - SM_b21188 0.19 -0.3 938,254 + SM_b21188 0.22 -0.1 938,254 + SM_b21188 0.22 -0.6 938,329 + SM_b21188 0.28 +0.3 938,329 + SM_b21188 0.28 -1.4 938,329 + SM_b21188 0.28 -1.1 938,347 + SM_b21188 0.30 +0.5 938,388 + SM_b21188 0.34 +0.7 938,388 + SM_b21188 0.34 -0.3 938,419 + SM_b21188 0.36 -0.3 938,419 + +0.4 938,420 - SM_b21188 0.36 +0.9 938,516 - SM_b21188 0.45 -0.8 938,864 - SM_b21188 0.75 +0.4 938,987 + SM_b21188 0.86 +2.7 938,988 - SM_b21188 0.86 +1.7 939,051 + +1.5 939,210 + +0.7 939,211 - +3.6 939,249 + -0.7 939,250 - +0.1 939,250 - -0.2 939,372 - SM_b21189 0.19 -3.4 939,372 - SM_b21189 0.19 +0.8 939,373 + SM_b21189 0.19 -0.1 939,373 + SM_b21189 0.19 +2.8 939,373 + SM_b21189 0.19 +0.7 939,374 - SM_b21189 0.19 -0.8 939,571 - SM_b21189 0.37 -0.2 939,637 - SM_b21189 0.43 -1.5 939,637 - SM_b21189 0.43 -1.8 939,637 - SM_b21189 0.43 +0.7 939,644 + SM_b21189 0.44 -1.3 939,704 - -0.7 939,786 - SM_b21189 0.57 -0.2 939,996 + SM_b21189 0.76 -1.2 939,996 + SM_b21189 0.76 +1.8 939,997 - SM_b21189 0.76 +3.1 939,997 - SM_b21189 0.76 +0.1 940,032 + SM_b21189 0.79 -0.0 940,032 + SM_b21189 0.79 -2.0 940,126 - SM_b21189 0.88 -0.4 940,301 + -0.1 940,301 + +0.4 940,301 + +1.3 940,302 - -0.1 940,302 - -1.3 940,302 - +0.2 940,590 + SM_b21190 0.31 -0.4 940,590 + SM_b21190 0.31 +0.5 940,591 - SM_b21190 0.32 +1.8 940,660 + SM_b21190 0.38 +0.1 940,661 - SM_b21190 0.38 -0.9 940,661 - SM_b21190 0.38 -0.0 940,661 - SM_b21190 0.38 +3.8 940,661 - SM_b21190 0.38 +1.6 940,917 + SM_b21190 0.63 +0.6 940,917 + SM_b21190 0.63 +0.2 940,925 - SM_b21190 0.64 -2.2 940,963 + SM_b21190 0.67 +0.4 940,963 + SM_b21190 0.67 -0.0 941,039 - SM_b21190 0.75 +0.6 941,202 + -0.3 941,203 - -0.1
Or see this region's nucleotide sequence