Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20829 and SM_b20830 are separated by 259 nucleotides SM_b20830 and SM_b20831 are separated by 74 nucleotides
SM_b20829: SM_b20829 - secreted calcium-binding protein, at 619,946 to 621,625
_b20829
SM_b20830: SM_b20830 - arabinose-5-phosphate isomerase, at 621,885 to 622,898
_b20830
SM_b20831: SM_b20831 - polysaccharide export-assoiated protein, at 622,973 to 623,926
_b20831
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 620.910 kb on + strand, within SM_b20829 at 620.910 kb on + strand, within SM_b20829 at 620.910 kb on + strand, within SM_b20829 at 620.911 kb on - strand, within SM_b20829 at 620.911 kb on - strand, within SM_b20829 at 621.012 kb on + strand, within SM_b20829 at 621.012 kb on + strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.057 kb on + strand, within SM_b20829 at 621.058 kb on - strand, within SM_b20829 at 621.138 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.375 kb on - strand, within SM_b20829 at 621.375 kb on - strand, within SM_b20829 at 621.379 kb on + strand, within SM_b20829 at 621.380 kb on - strand, within SM_b20829 at 621.422 kb on - strand, within SM_b20829 at 621.500 kb on - strand at 621.534 kb on + strand at 621.535 kb on - strand at 621.538 kb on + strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.630 kb on - strand at 621.669 kb on - strand at 621.673 kb on + strand at 621.673 kb on + strand at 621.673 kb on + strand at 621.674 kb on - strand at 621.674 kb on - strand at 621.682 kb on + strand at 621.795 kb on + strand at 621.826 kb on + strand at 622.153 kb on - strand, within SM_b20830 at 622.640 kb on - strand, within SM_b20830 at 622.640 kb on - strand, within SM_b20830 at 622.640 kb on - strand, within SM_b20830 at 622.774 kb on + strand, within SM_b20830 at 622.775 kb on - strand, within SM_b20830 at 622.903 kb on + strand at 622.903 kb on + strand at 622.903 kb on + strand at 622.904 kb on - strand at 622.904 kb on - strand at 622.906 kb on + strand at 622.906 kb on + strand at 622.907 kb on - strand at 622.907 kb on - strand at 622.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 620,910 + SM_b20829 0.57 -0.1 620,910 + SM_b20829 0.57 +0.5 620,910 + SM_b20829 0.57 -0.9 620,911 - SM_b20829 0.57 -0.8 620,911 - SM_b20829 0.57 +0.5 621,012 + SM_b20829 0.63 -0.0 621,012 + SM_b20829 0.63 -1.3 621,013 - SM_b20829 0.64 +1.4 621,013 - SM_b20829 0.64 -1.3 621,013 - SM_b20829 0.64 -1.1 621,013 - SM_b20829 0.64 +0.0 621,057 + SM_b20829 0.66 -1.5 621,058 - SM_b20829 0.66 +0.5 621,138 - SM_b20829 0.71 +0.1 621,264 - SM_b20829 0.78 +3.7 621,264 - SM_b20829 0.78 -0.7 621,264 - SM_b20829 0.78 -0.2 621,264 - SM_b20829 0.78 +1.2 621,375 - SM_b20829 0.85 -0.3 621,375 - SM_b20829 0.85 -0.4 621,379 + SM_b20829 0.85 -1.7 621,380 - SM_b20829 0.85 -0.3 621,422 - SM_b20829 0.88 +1.4 621,500 - -2.7 621,534 + +1.9 621,535 - +1.7 621,538 + +0.6 621,539 - +0.4 621,539 - +1.6 621,539 - -1.6 621,539 - -1.1 621,539 - +0.3 621,630 - +0.9 621,669 - -1.1 621,673 + -0.1 621,673 + +0.9 621,673 + +0.2 621,674 - -1.1 621,674 - +2.2 621,682 + -3.3 621,795 + -0.0 621,826 + -3.5 622,153 - SM_b20830 0.26 -0.4 622,640 - SM_b20830 0.74 +0.0 622,640 - SM_b20830 0.74 -1.7 622,640 - SM_b20830 0.74 -1.3 622,774 + SM_b20830 0.88 -1.2 622,775 - SM_b20830 0.88 +1.7 622,903 + -1.3 622,903 + -1.4 622,903 + +0.7 622,904 - +1.5 622,904 - -1.0 622,906 + -2.1 622,906 + -0.0 622,907 - -2.3 622,907 - -3.6 622,909 + +0.7
Or see this region's nucleotide sequence