Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20818 and SM_b20819 are separated by 42 nucleotides SM_b20819 and SM_b20820 are separated by 109 nucleotides SM_b20820 and SM_b20821 are separated by 80 nucleotides
SM_b20818: SM_b20818 - hydrocarbon oxygenase, at 607,130 to 608,221
_b20818
SM_b20819: SM_b20819 - ferredoxin, at 608,264 to 608,581
_b20819
SM_b20820: SM_b20820 - ferredoxin reductase, at 608,691 to 609,920
_b20820
SM_b20821: SM_b20821 - ATPGTP-binding hydroxymethyltransferase, at 610,001 to 610,801
_b20821
Position (kb) 608
609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 607.766 kb on + strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.767 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.934 kb on + strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 608.174 kb on + strand at 608.219 kb on + strand at 608.220 kb on - strand at 608.357 kb on + strand, within SM_b20819 at 608.358 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.467 kb on + strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.534 kb on + strand, within SM_b20819 at 608.579 kb on + strand at 608.700 kb on - strand at 608.808 kb on + strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.884 kb on - strand, within SM_b20820 at 608.900 kb on + strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.982 kb on + strand, within SM_b20820 at 608.983 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.497 kb on - strand, within SM_b20820 at 609.537 kb on + strand, within SM_b20820 at 609.538 kb on - strand, within SM_b20820 at 609.663 kb on + strand, within SM_b20820 at 609.664 kb on - strand, within SM_b20820 at 609.923 kb on - strand at 609.988 kb on - strand at 610.229 kb on + strand, within SM_b20821 at 610.229 kb on + strand, within SM_b20821 at 610.230 kb on - strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.568 kb on + strand, within SM_b20821 at 610.610 kb on + strand, within SM_b20821 at 610.611 kb on - strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.631 kb on + strand, within SM_b20821 at 610.653 kb on - strand, within SM_b20821
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 607,766 + SM_b20818 0.58 -0.6 607,766 + SM_b20818 0.58 -1.3 607,767 - SM_b20818 0.58 +2.2 607,794 - SM_b20818 0.61 +0.8 607,794 - SM_b20818 0.61 +1.2 607,934 + SM_b20818 0.74 -0.1 607,935 - SM_b20818 0.74 -0.4 607,935 - SM_b20818 0.74 +0.7 607,935 - SM_b20818 0.74 +2.6 607,976 + SM_b20818 0.77 +3.4 607,976 + SM_b20818 0.77 +0.1 607,976 + SM_b20818 0.77 +0.0 607,977 - SM_b20818 0.78 -0.0 607,977 - SM_b20818 0.78 -2.0 608,174 + -0.4 608,219 + +1.3 608,220 - +1.2 608,357 + SM_b20819 0.29 -0.4 608,358 - SM_b20819 0.30 +0.2 608,434 - SM_b20819 0.53 +1.7 608,434 - SM_b20819 0.53 -0.6 608,467 + SM_b20819 0.64 -0.8 608,484 - SM_b20819 0.69 -0.2 608,484 - SM_b20819 0.69 -4.3 608,534 + SM_b20819 0.85 -4.1 608,579 + +0.2 608,700 - +0.1 608,808 + +0.4 608,809 - -3.3 608,809 - -2.3 608,809 - +0.4 608,884 - SM_b20820 0.16 +0.4 608,900 + SM_b20820 0.17 -1.4 608,901 - SM_b20820 0.17 +0.3 608,901 - SM_b20820 0.17 -2.4 608,982 + SM_b20820 0.24 +1.9 608,983 - SM_b20820 0.24 +0.9 608,993 - SM_b20820 0.25 -0.3 608,993 - SM_b20820 0.25 +0.2 609,104 + SM_b20820 0.34 -0.0 609,104 + SM_b20820 0.34 +0.3 609,105 - SM_b20820 0.34 -0.9 609,105 - SM_b20820 0.34 -0.5 609,105 - SM_b20820 0.34 +0.7 609,497 - SM_b20820 0.66 +0.9 609,537 + SM_b20820 0.69 -1.7 609,538 - SM_b20820 0.69 +0.3 609,663 + SM_b20820 0.79 +0.5 609,664 - SM_b20820 0.79 +0.3 609,923 - +0.5 609,988 - +0.8 610,229 + SM_b20821 0.28 +2.2 610,229 + SM_b20821 0.28 -0.1 610,230 - SM_b20821 0.29 -3.3 610,568 + SM_b20821 0.71 +0.1 610,568 + SM_b20821 0.71 +1.3 610,568 + SM_b20821 0.71 +1.1 610,610 + SM_b20821 0.76 +0.3 610,611 - SM_b20821 0.76 -0.4 610,631 + SM_b20821 0.79 -0.9 610,631 + SM_b20821 0.79 +1.5 610,653 - SM_b20821 0.81 +2.3
Or see this region's nucleotide sequence